View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21572_low_2 (Length: 702)

Name: NF21572_low_2
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21572_low_2
NF21572_low_2
[»] chr7 (21 HSPs)
chr7 (171-685)||(29474565-29475092)
chr7 (171-319)||(35207179-35207327)
chr7 (10-117)||(29474403-29474511)
chr7 (10-117)||(3074116-3074223)
chr7 (171-319)||(19318148-19318296)
chr7 (414-523)||(29444702-29444809)
chr7 (171-242)||(48006202-48006273)
chr7 (171-233)||(2834288-2834350)
chr7 (179-242)||(26903588-26903651)
chr7 (216-319)||(19318345-19318448)
chr7 (171-319)||(3740644-3740792)
chr7 (212-319)||(35363319-35363426)
chr7 (250-319)||(35207406-35207475)
chr7 (209-320)||(6408444-6408556)
chr7 (252-319)||(19318452-19318519)
chr7 (252-319)||(25048257-25048324)
chr7 (172-242)||(35363471-35363541)
chr7 (178-238)||(6408336-6408396)
chr7 (252-312)||(39983870-39983930)
chr7 (212-319)||(2834392-2834499)
chr7 (212-292)||(48006317-48006397)
[»] scaffold0242 (2 HSPs)
scaffold0242 (327-523)||(6181-6376)
scaffold0242 (547-674)||(6423-6553)
[»] chr8 (17 HSPs)
chr8 (171-319)||(16324845-16324993)
chr8 (171-319)||(6911030-6911178)
chr8 (171-319)||(41403760-41403908)
chr8 (211-319)||(43801663-43801771)
chr8 (209-319)||(14999172-14999282)
chr8 (171-319)||(43801471-43801620)
chr8 (171-319)||(8489374-8489522)
chr8 (209-319)||(41722017-41722127)
chr8 (171-304)||(22781071-22781204)
chr8 (171-241)||(41721906-41721976)
chr8 (252-319)||(41403993-41404060)
chr8 (250-319)||(15009089-15009158)
chr8 (209-287)||(6911219-6911297)
chr8 (250-319)||(9133901-9133971)
chr8 (209-319)||(16325034-16325146)
chr8 (172-227)||(14999324-14999379)
chr8 (209-242)||(40621717-40621750)
[»] chr6 (8 HSPs)
chr6 (171-319)||(16125674-16125822)
chr6 (171-319)||(22748589-22748737)
chr6 (172-313)||(11014474-11014615)
chr6 (171-278)||(33277348-33277455)
chr6 (209-319)||(16125523-16125633)
chr6 (250-294)||(24197709-24197753)
chr6 (189-236)||(6705297-6705344)
chr6 (251-319)||(22748820-22748888)
[»] chr2 (15 HSPs)
chr2 (171-319)||(29892951-29893097)
chr2 (171-319)||(17200079-17200227)
chr2 (171-319)||(22563362-22563510)
chr2 (171-319)||(20296568-20296716)
chr2 (171-311)||(12232572-12232711)
chr2 (179-319)||(21265564-21265703)
chr2 (171-319)||(34645698-34645846)
chr2 (209-319)||(21265752-21265862)
chr2 (209-319)||(22563211-22563321)
chr2 (250-319)||(4371455-4371524)
chr2 (209-319)||(34645548-34645657)
chr2 (179-242)||(13979792-13979855)
chr2 (208-287)||(4682832-4682910)
chr2 (210-297)||(17200269-17200356)
chr2 (251-319)||(4682757-4682825)
[»] chr5 (15 HSPs)
chr5 (171-319)||(17370068-17370216)
chr5 (171-319)||(31194117-31194265)
chr5 (193-319)||(8754659-8754785)
chr5 (179-313)||(39634963-39635096)
chr5 (171-287)||(42546501-42546617)
chr5 (209-319)||(14076859-14076969)
chr5 (213-319)||(31193966-31194072)
chr5 (209-319)||(36955484-36955594)
chr5 (171-311)||(32347049-32347189)
chr5 (172-242)||(14076746-14076816)
chr5 (171-238)||(304093-304160)
chr5 (252-319)||(36955304-36955371)
chr5 (209-284)||(42546385-42546460)
chr5 (209-241)||(39634882-39634914)
chr5 (250-294)||(43449493-43449537)
[»] chr4 (27 HSPs)
chr4 (178-319)||(50544257-50544398)
chr4 (10-117)||(23047105-23047212)
chr4 (180-319)||(7061973-7062112)
chr4 (171-319)||(9551376-9551525)
chr4 (183-315)||(46993072-46993204)
chr4 (172-307)||(1025059-1025194)
chr4 (178-278)||(11790021-11790121)
chr4 (212-319)||(17914941-17915048)
chr4 (172-278)||(26297356-26297461)
chr4 (176-315)||(3556371-3556509)
chr4 (209-319)||(24673911-24674021)
chr4 (250-315)||(54316060-54316125)
chr4 (209-318)||(5465855-5465964)
chr4 (187-287)||(23655100-23655200)
chr4 (209-319)||(11789860-11789970)
chr4 (180-232)||(32591309-32591361)
chr4 (171-292)||(5466005-5466122)
chr4 (183-287)||(19037886-19037988)
chr4 (261-319)||(35256143-35256201)
chr4 (213-317)||(23655261-23655366)
chr4 (212-303)||(21785891-21785982)
chr4 (220-303)||(42475893-42475976)
chr4 (204-278)||(17914755-17914829)
chr4 (209-269)||(9551275-9551335)
chr4 (274-316)||(32591165-32591207)
chr4 (290-319)||(21785720-21785749)
chr4 (209-241)||(19037801-19037833)
[»] chr3 (19 HSPs)
chr3 (171-319)||(8799318-8799465)
chr3 (171-311)||(43797361-43797501)
chr3 (209-319)||(4041373-4041483)
chr3 (171-319)||(38499970-38500121)
chr3 (181-315)||(53197147-53197279)
chr3 (179-319)||(48346138-48346279)
chr3 (171-238)||(29828759-29828826)
chr3 (209-319)||(53196989-53197099)
chr3 (178-242)||(4041261-4041325)
chr3 (250-319)||(38499820-38499889)
chr3 (182-283)||(46883452-46883553)
chr3 (183-287)||(43797807-43797909)
chr3 (209-292)||(46883602-46883685)
chr3 (209-311)||(29828871-29828973)
chr3 (213-313)||(43797546-43797646)
chr3 (209-292)||(8799506-8799589)
chr3 (204-242)||(20383220-20383258)
chr3 (173-209)||(20383143-20383179)
chr3 (212-269)||(43797694-43797751)
[»] chr1 (25 HSPs)
chr1 (171-318)||(34969987-34970134)
chr1 (171-319)||(33156457-33156604)
chr1 (180-313)||(49776984-49777117)
chr1 (171-269)||(27171951-27172049)
chr1 (179-319)||(24882972-24883110)
chr1 (207-319)||(24883156-24883268)
chr1 (171-318)||(33400857-33401006)
chr1 (171-242)||(42082968-42083039)
chr1 (171-313)||(5771915-5772057)
chr1 (179-319)||(3385309-3385452)
chr1 (171-292)||(13947074-13947195)
chr1 (171-242)||(38338745-38338816)
chr1 (212-319)||(3385504-3385611)
chr1 (209-319)||(27171800-27171910)
chr1 (172-241)||(39781217-39781285)
chr1 (209-312)||(33156645-33156747)
chr1 (171-278)||(37948940-37949047)
chr1 (251-319)||(49776820-49776888)
chr1 (250-319)||(33401087-33401156)
chr1 (250-319)||(34622556-34622625)
chr1 (209-311)||(37948797-37948899)
chr1 (209-278)||(13946964-13947033)
chr1 (209-269)||(43297041-43297101)
chr1 (212-269)||(38338860-38338917)
chr1 (287-319)||(39781291-39781323)


Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 171 - 685
Target Start/End: Original strand, 29474565 - 29475092
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||    
T  29474565 catgttcccttcttctgtcatatcacaacaaccttttattgttttttaatttaaaatttcaaccgttagatattttttt-ctacatgtcttgcatccaag 29474663  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcataccc----gaactatgggaatactatatcaaacaaaataattgatatcaaggttaaaaca 366  Q
    ||||||||||||||||| ||| ||||||||||| ||||| ||||    ||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  29474664 ctctaaatagagtaaatggagtttagcctaaatggagcacacccatccgaactctaggaatactatatcaaacaaaatatttgatatcaaggttaaaaca 29474763  T
Q  367 caggtccaccaaatcaaccattaaagcaatcttgtaccatagaataagtttttgcattcctaaccatgatttatcagtccattcagagacaaaataaaat 466  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29474764 caggtccaccaaatcaaccattaaagcaatcttgtaccataaaataagtttttgcattcctaaccatgatttatcagtccattcagagacaaaataaaat 29474863  T
Q  467 gtattgagaccacaaacaaagaaagaaaaaagaagttcttgcagaagagtaatgttaaatagatactttatagaaa----------actgttgatttttc 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  29474864 gtattgagaccacaaacaaagaaagaaaaaagaagttcttgcagaagagtaatgttaaatagatactttatagaaaccaaatgctcactgttgatttttc 29474963  T
Q  557 tttctttttcctaaacatgaaaaggttctccttttgttcttccattcatgattcatcataacttgtagtagcatctgttgaagtagctgtgccgccaaag 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29474964 tttctttttcctaaacatgaaaaggttctccttttgttcttccattcatgattcatcataacttgtagtagcatctgttgaagtagctgtgccgccaaag 29475063  T
Q  657 cttgtatcattctgcataaccacacttct 685  Q
    |||||||||||||||||||||||||||||    
T  29475064 cttgtatcattctgcataaccacacttct 29475092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 35207327 - 35207179
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||     
T  35207327 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaa 35207228  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | |||||| |||||||| ||||||||||||||| ||  |||||||||||    
T  35207227 ccctaaatggagtaaatggagcttagcctaaatggaatatacccgaact 35207179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 29474403 - 29474511
Alignment:
Q  10 tattcttatctcaacaaaagtatattgagagagtgcttgatagatttaatatgaataattggaaatc-tgttgctattccaattgctgcgtatttcaagt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |  ||| ||| |||| |||||||| |||||||||    
T  29474403 tattcttatctcaacaaaagtatattgagagagtgcttgataggtttaatatgaataattgtaaaccaagtttctactccacttgctgcgcatttcaagt 29474502  T
Q  109 tatcttcag 117  Q
    |||||||||    
T  29474503 tatcttcag 29474511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 3074223 - 3074116
Alignment:
Q  10 tattcttatctcaacaaaagtatattgagagagtgcttgatagatttaatatgaataattggaaatctgttgctattccaattgctgcgtatttcaagtt 109  Q
    |||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||| ||||| ||| |||| |||||||| ||||||||||    
T  3074223 tatttttatctcaacaaaagtatattaaaagagtgcttgataggtttaatatgaataattgtaaacctgtttctactccacttgctgcgcatttcaagtt 3074124  T
Q  110 atcttcag 117  Q
    ||||||||    
T  3074123 atcttcag 3074116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 19318296 - 19318148
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||       | |||||||||| |||||||     
T  19318296 catgttcctttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaatcgttagatatttttttgtcacatgtcttacatccaaa 19318197  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||| |||||||| | ||||| ||||||| |||||||||| ||||    
T  19318196 ctctaaatggagtaaatggcgcttaacctaaatggagcatacccaaact 19318148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 414 - 523
Target Start/End: Original strand, 29444702 - 29444809
Alignment:
Q  414 gtttttgcattcctaaccatgatttatcagtccattcagagacaaaataaaatgtattgagaccacaaacaaagaaagaaaaaagaag-ttcttgcagaa 512  Q
    |||||||||||||||| ||||||||||||||| |||  ||||| ||||||||||||||| |||||| ||||| ||||||||||||||| | |||||||||    
T  29444702 gtttttgcattcctaatcatgatttatcagtcaatt--gagactaaataaaatgtattgcgaccac-aacaatgaaagaaaaaagaagatacttgcagaa 29444798  T
Q  513 gagtaatgtta 523  Q
    |||||||||||    
T  29444799 gagtaatgtta 29444809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 48006273 - 48006202
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  48006273 catgttcccttcttttctcatatcgcaacaactttttattgttttttaatttaaaatctcaaccgttagata 48006202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 2834350 - 2834288
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaac 233  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  2834350 catgtttccttcttctctcatatcacaacaaccttttattgttttttaatttaaaatctcaac 2834288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 26903588 - 26903651
Alignment:
Q  179 cttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  26903588 cttcttctctcatatcgcaacaactttttattattttttaatttaaaatctcaaccgttagata 26903651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 319
Target Start/End: Original strand, 19318345 - 19318448
Alignment:
Q  216 ttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccg 315  Q
    |||||||||||| ||||||||||||||       ||||||||||||||||| || |  ||||| ||||||||  |||||||||||||| |||||||||||    
T  19318345 ttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccg 19318444  T
Q  316 aact 319  Q
    ||||    
T  19318445 aact 19318448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 3740792 - 3740644
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| |||||||||||||||||  |||||| |||||||||||||||||||||||| | || ||||| |||       ||| ||| |||| |||||||     
T  3740792 catgttcccttcttctctcatatcttaacaacattttattgttttttaatttaaaatctgaatcgttaaatatctttttgccgcatatcttacatccaaa 3740693  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |  ||||| || |||||  || ||| ||||||| |||||||||||||||    
T  3740692 ccttaaatggaataaataaagtttaacctaaattgagcatacccgaact 3740644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 35363426 - 35363319
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    |||||||||||||||| |||||||||| ||        ||||||||| ||||||| || |||||||| ||||||||  | |||||||||||| |||||||    
T  35363426 ttttttaatttaaaatctcaaccgttatatttttttttgccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcata 35363327  T
Q  312 cccgaact 319  Q
    ||||||||    
T  35363326 cccgaact 35363319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 35207406 - 35207475
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||||||||||| | |||||| |||||||| ||| ||||||||||| ||||||| |||||||    
T  35207406 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaact 35207475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 6408444 - 6408556
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattg-agcttagcctaaatagag 307  Q
    ||||||||||||||||||| ||||||||||||||       |||||||||||||||||||| | ||||||  ||||||  | || ||| ||||||| |||    
T  6408444 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatgaagtaaaaagaagtttaacctaaatggag 6408543  T
Q  308 catacccgaacta 320  Q
    |||||||| ||||    
T  6408544 catacccggacta 6408556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 19318452 - 19318519
Alignment:
Q  252 cacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    ||||||||||||||| || |  ||||| |||||||| ||||||||||||||| |||||||||||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaact 19318519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 25048257 - 25048324
Alignment:
Q  252 cacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    ||||||||||||||||||   ||||||  ||||||| ||||||||||||||| |||||||||||||||    
T  25048257 cacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaact 25048324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 35363471 - 35363541
Alignment:
Q  172 atgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    ||||| |||| |||||||||||| ||||||| || |||| |||||||||||||||| |||||| |||||||    
T  35363471 atgttccctttttctctcatatcgcaacaacattctattattttttaatttaaaatctcaaccattagata 35363541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 6408396 - 6408336
Alignment:
Q  178 ccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgtta 238  Q
    ||||||||||||||||  || |||| ||||||||||||||||| |||||| ||||||||||    
T  6408396 ccttcttctctcatatggcagcaaccttttattgttttttaatataaaatctcaaccgtta 6408336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 39983870 - 39983930
Alignment:
Q  252 cacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatac 312  Q
    |||||||||||||||||| | |||||| |||||||| |||||| |||||||| ||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatac 39983930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 2834392 - 2834499
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    |||||||||||||||| ||||| |||| |||       ||||||||| ||| |||||| | |||||| || ||||| || |||||||||||| |||||||    
T  2834392 ttttttaatttaaaatctcaactgttacatattattttgccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcata 2834491  T
Q  312 cccgaact 319  Q
    ||| ||||    
T  2834492 cccaaact 2834499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 48006317 - 48006397
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagc 292  Q
    |||||||||||||||| |||||||||| |||       ||||||||| ||||||||||   ||||||||||||||| ||||    
T  48006317 ttttttaatttaaaatctcaaccgttaaatatttttttgccacatgttttgcatccaaatcctaaatagagtaaatggagc 48006397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 327 - 523
Target Start/End: Original strand, 6181 - 6376
Alignment:
Q  327 tactatatcaaacaaaataattgatatcaaggttaaaacacaggtccaccaaatcaaccattaaagcaatcttgtaccatagaataagtttttgcattcc 426  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||  |||| | |||||||||||    
T  6181 tactatatcaaacgaaataattgatatcaaagttaaaacataggtccaccaaatcaaccatcaaagcaatcttgtaccat--aatacg-ttttgcattcc 6277  T
Q  427 taaccatgatttatcagtccattcagagacaaaataaaatgtattgagaccaca----aacaaagaaagaaaaaagaagttcttgcagaagagtaatgtt 522  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  | |    ||||||||||||||||  ||||||||||||||||||||||||    
T  6278 taaccatgatttatcagtccattcagagactaaataaaatgtattgagaagagaacacaacaaagaaagaaaaa--aagttcttgcagaagagtaatgtt 6375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 547 - 674
Target Start/End: Original strand, 6423 - 6553
Alignment:
Q  547 ttgatttttctttctttttcctaaacatgaaaaggttctcc-ttttgtt--cttccattcatgattcatcataacttgtagtagcatctgttgaagtagc 643  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||  || ||||||||||||||||||||||||||||| |||||||||||||||     
T  6423 ttgatttttctttctttttcctaaacatcaaaaggttctcccttttgttttctcccattcatgattcatcataacttgtagtaacatctgttgaagtagt 6522  T
Q  644 tgtgccgccaaagcttgtatcattctgcata 674  Q
    ||||||||||||||||||||||| |||||||    
T  6523 tgtgccgccaaagcttgtatcatcctgcata 6553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 16324993 - 16324845
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||       | ||||||||||||||||||     
T  16324993 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaa 16324894  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | |||||| || ||||||||||||||||||||| |||||| ||||||||    
T  16324893 ccctaaatggattaaattgagcttagcctaaatggagcatgcccgaact 16324845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 6911178 - 6911030
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |||||||||       |||||||||||| |||||||     
T  6911178 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaa 6911079  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | |||||| |||||||| ||||||||||||||| ||||||||| |||||    
T  6911078 ccctaaatggagtaaatggagcttagcctaaatggagcatacctgaact 6911030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 41403908 - 41403760
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||       | ||||| |||| |||| ||     
T  41403908 catgtttccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaactgttagatatttttttgtcacatatcttacatcaaaa 41403809  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
      |||||| ||||||||||||||||  ||||||  ||||||||||||||    
T  41403808 tcctaaatggagtaaattgagcttaatctaaatgaagcatacccgaact 41403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 43801663 - 43801771
Alignment:
Q  211 gttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcat 310  Q
    ||||||||||||||||||||||| ||||||||       ||||||| |||||||||||| |||||||| |||||||| ||||||||||||||| || |||    
T  43801663 gttttttaatttaaaatttcaactgttagatatttttttgccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacat 43801762  T
Q  311 acccgaact 319  Q
    |||||||||    
T  43801763 acccgaact 43801771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 14999282 - 14999172
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||||  |||||||       |||||||||||||||||||| | |||||| |||||||||||||||||||||||| ||||    
T  14999282 ttgttttttaatttaaaatctcaactattagatactttattgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagc 14999183  T
Q  309 atacccgaact 319  Q
    ||| |||||||    
T  14999182 atatccgaact 14999172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 43801620 - 43801471
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttaga-tannnnnnngccacatgtcttgcatccaa 269  Q
    |||||||| ||||||| ||||||| ||||||| ||||||| |||||||||||||||| |||||||||| | |        |||||||||||| |||||||    
T  43801620 catgtttctttcttctttcatatcccaacaaccttttattattttttaatttaaaatctcaaccgttatattttttttttgccacatgtcttacatccaa 43801521  T
Q  270 gctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
     |||||||| ||||||||  || |||||||||||  ||||||||||||||    
T  43801520 actctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaact 43801471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 8489522 - 8489374
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||| || ||||||  |||||| |||||||||||||||||||||||| |||| |||||||||       |||||||||||| |||||||     
T  8489522 catgttcccttcttttcccatatcggaacaaccttttattgttttttaatttaaaatctcaatcgttagatatttttttgccacatgtcttacatccaaa 8489423  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | |||||| || |||||  |||||| ||||||| |||||||||| ||||    
T  8489422 ccctaaatggaataaatgaagcttaacctaaatggagcatacccaaact 8489374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 41722017 - 41722127
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||| ||||||||| | ||||||||||||       || ||||||||||||||||||||||||||| ||||||| |||||||||||||||  | |    
T  41722017 ttgtttttttatttaaaatcttaaccgttagatatttttttgcaacatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatgaaac 41722116  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  41722117 atacccgaact 41722127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 171 - 304
Target Start/End: Complemental strand, 22781204 - 22781071
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||| ||||||| ||||||| |||| ||||||||||||||||||| ||||| ||||||||       |||||||| |||||||||||     
T  22781204 catgttcccttcttctttcatatcgcaacaaccttttgttgttttttaatttaaaatctcaactgttagatatctttttgccacatgccttgcatccaaa 22781105  T
Q  271 ctctaaatagagtaaattgagcttagcctaaata 304  Q
    | || ||| ||||||||  || ||||||||||||    
T  22781104 ccctgaatggagtaaatgaagtttagcctaaata 22781071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 41721976 - 41721906
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagat 241  Q
    |||||| ||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||    
T  41721976 catgttcccttcttctctcatatcacaacaacattttcttattttttaatttaaaatctcaaccgttagat 41721906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 41403993 - 41404060
Alignment:
Q  252 cacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||||||||| | |||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  41403993 cacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacccaaact 41404060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 15009089 - 15009158
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||| ||||||| | |||||| ||||||||  |||||||||||||| |||||||||||||||    
T  15009089 gccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 15009158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 6911219 - 6911297
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaat 287  Q
    ||||||||||||||||||| ||||||||| ||||       |||||||||||||||||||| | |||||| ||||||||    
T  6911219 ttgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaat 6911297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 9133971 - 9133901
Alignment:
Q  250 gccacatgtcttgcatccaag-ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||| |||||||||  | |||||| |||||||||||||||  |||||||||||||||||| ||||    
T  9133971 gccacatgtcatgcatccaaatccctaaatggagtaaattgagctttacctaaatagagcatacccaaact 9133901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 16325034 - 16325146
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngcc--acatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaataga 306  Q
    ||||||||||||||||||| ||||||||||||||        ||  ||||||||||||||||| | |||||| |||||||| ||| || || |||||  |    
T  16325034 ttgttttttaatttaaaatctcaaccgttagatatttttttaccatacatgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaa 16325133  T
Q  307 gcatacccgaact 319  Q
    |||||| ||||||    
T  16325134 gcatactcgaact 16325146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 14999324 - 14999379
Alignment:
Q  172 atgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaat 227  Q
    ||||| ||||||||||||||||  ||||||  |||||||| |||||||||||||||    
T  14999324 atgttcccttcttctctcatattgcaacaatcttttattgctttttaatttaaaat 14999379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 40621717 - 40621750
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagata 242  Q
    ||||||||||||||||||| ||||||||||||||    
T  40621717 ttgttttttaatttaaaatctcaaccgttagata 40621750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 16125674 - 16125822
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||       | ||||| |||||||||||||    
T  16125674 catgtttcattcttctctcatatcacaacaaccttttattgttttttaatttaaaatctcatctgttagatattattttgtcacatatcttgcatccaag 16125773  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||| |||||||| |||||||| |||||||||||||| |||||||    
T  16125774 ctctaaattgagtaaatggagcttagtctaaatagagcatatccgaact 16125822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 22748737 - 22748589
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||| ||||       ||||||||||||||||||||     
T  22748737 catgttcccttcttctctcatatggcaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 22748638  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
       ||||| |||||||| |||| |||||||||| |||||||||||||||    
T  22748637 tcttaaatggagtaaatggagcatagcctaaattgagcatacccgaact 22748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 172 - 313
Target Start/End: Original strand, 11014474 - 11014615
Alignment:
Q  172 atgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagc 271  Q
    ||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||       | ||||| |||||||| ||| |    
T  11014474 atgttcccttcttctctcatatcgcaacaaccttttattattttttaatttaaaatttcaaccgttaaatatttttttgtcacatatcttgcattcaaac 11014573  T
Q  272 tctaaatagagtaaattgagcttagcctaaatagagcatacc 313  Q
      |||||||| ||||| ||| ||||||||||| |||||||||    
T  11014574 attaaatagaataaatggagtttagcctaaatggagcatacc 11014615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 33277455 - 33277348
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| | ||||||||||||||| |||||||||| |||| |||||||||||||||| |||||| ||| |||       ||||||||||||||||||||     
T  33277455 catgttccattcttctctcatatcgcaacaactttatattattttttaatttaaaatctcaaccattaaatatttttttgccacatgtcttgcatccaaa 33277356  T
Q  271 ctctaaat 278  Q
    | ||||||    
T  33277355 ccctaaat 33277348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 16125633 - 16125523
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    |||||||||||||||||||||||| ||||| |||       |||||||||||||||||||| | ||||||  | |||||  || ||||||||||| ||||    
T  16125633 ttgttttttaatttaaaatttcaatcgttaaatatttttttgccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagc 16125534  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  16125533 atacccgaact 16125523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 24197753 - 24197709
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagctt 294  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||    
T  24197753 gccacatgtcttgcatccaaagtctaaatagactaaattgagctt 24197709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 6705344 - 6705297
Alignment:
Q  189 catatcacaacaactttttattgttttttaatttaaaatttcaaccgt 236  Q
    |||||||||| ||  |||||||||||||||||||||||| ||||||||    
T  6705344 catatcacaataatcttttattgttttttaatttaaaatctcaaccgt 6705297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 22748820 - 22748888
Alignment:
Q  251 ccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    ||||||||||| |||||||   |||||| |||||||| || ||||| |||||| ||||||||| |||||    
T  22748820 ccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagcatacctgaact 22748888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 29892951 - 29893097
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||| ||||||||||||||       | ||||||||||||||||||     
T  29892951 catgttcccttcttctctcatatcgcaacaatcttttattgttttttaatttaaaatctcaaccgttagata--tttttgtcacatgtcttgcatccaaa 29893048  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  29893049 ccctaaatagagtaaatagagcttagcctaaatggagcatacccgaact 29893097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 17200227 - 17200079
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||       |||||||||||| |||||||     
T  17200227 catgttcccttcttctctcatatcacaacaaccttttattgttttttaatttaaaatctcaaccattagatatttatttgccacatgtcttacatccaaa 17200128  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
      |||||| |||||||| |||||| |||||||| |||||||||||||||    
T  17200127 tcctaaatggagtaaatggagctttgcctaaatggagcatacccgaact 17200079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 22563362 - 22563510
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||     
T  22563362 catgttcccttcttctctcacatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaa 22563461  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
      |||||| |||||||| ||| ||||||||||| |||||||||||||||    
T  22563462 tcctaaatggagtaaatggagtttagcctaaatggagcatacccgaact 22563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 20296568 - 20296716
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||       |||||||||||| |||||||     
T  20296568 catgttcccttcttctctcatatgacaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttacatccaat 20296667  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
       ||||| |||||||| |||||||||||||||||||||||||| ||||    
T  20296668 tcttaaatggagtaaatggagcttagcctaaatagagcatacccaaact 20296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 12232711 - 12232572
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| |||||||||||||| || ||||||| |||||||||||||||||||||||| ||||||||||||||       |||||||||||| |||||||     
T  12232711 catgttcccttcttctctcatgtcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagata-ttttttgccacatgtcttacatccaaa 12232613  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    | ||||||||||||||| ||||||||||||||| |||||||    
T  12232612 ccctaaatagagtaaatggagcttagcctaaatggagcata 12232572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 21265703 - 21265564
Alignment:
Q  179 cttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaat 278  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||| | ||||||    
T  21265703 cttcttctctcatatcgcaataacgttttattgttttttaatttaaaatctcaaccgttagata-ttttttgccacatgtcttgcatccaaaccctaaat 21265605  T
Q  279 agagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
     ||||||||||||||||| |||||| |||||||||| ||||    
T  21265604 ggagtaaattgagcttagtctaaatggagcataccctaact 21265564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 34645698 - 34645846
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||       |||||||||||| |||||||     
T  34645698 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatattttcttgccacatgtcttacatccaaa 34645797  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | |||||| || ||||| ||| | ||||||||| ||  |||||||||||    
T  34645798 ccctaaatggaataaatggagttaagcctaaatggaatatacccgaact 34645846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 21265752 - 21265862
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||||| |||||||       |||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||    
T  21265752 ttgttttttaatttaaaatctcaaccattagatacttttttgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagc 21265851  T
Q  309 atacccgaact 319  Q
    |||| ||||||    
T  21265852 atactcgaact 21265862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 22563321 - 22563211
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||||||||| |||       |||||||||||||||||||| | |||||| |||||||| ||||||||||||||| ||||    
T  22563321 ttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagc 22563222  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  22563221 atacccgaact 22563211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 4371524 - 4371455
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaact 4371455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 34645657 - 34645548
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||| |||||||||       |||||||||||||||||||  | |||||| |||||||| || |||| ||||||||||||    
T  34645657 ttgttttttaatttaaaatctcaatcgttagatatttttt-gccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagc 34645559  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  34645558 atacccgaact 34645548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 13979792 - 13979855
Alignment:
Q  179 cttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||||||||| |||| |||||||||    
T  13979792 cttcttctctcctatcgcaacaacatttcattgttttttaatttaaaatctcaatcgttagata 13979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 4682832 - 4682910
Alignment:
Q  208 attgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaat 287  Q
    ||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||||| ||||||  |||||||    
T  4682832 attgtattttaatttaaaatttcaaccgttagat-tttttttgccacatatcttgcatccaagccctaaatgaagtaaat 4682910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 17200269 - 17200356
Alignment:
Q  210 tgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagc 297  Q
    |||||| ||||||||||| |||| |||||||||       |||||||||||| ||||||| |  ||||| |||||||| |||||||||    
T  17200269 tgttttataatttaaaatatcaatcgttagatatttttttgccacatgtcttacatccaaaccttaaatggagtaaatggagcttagc 17200356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 4682825 - 4682757
Alignment:
Q  251 ccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||||||| || |||||||| ||||||||  ||||||   ||||| || ||||||||||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaatgaagcttaaattaaatggaacatacccgaact 4682757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 17370216 - 17370068
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||     
T  17370216 catgttcccttcttctctcatattgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaa 17370117  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | |||||| |||||||| ||| ||||| ||||| |||||||||||||||    
T  17370116 ccctaaatggagtaaatggagtttagcataaatggagcatacccgaact 17370068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 31194117 - 31194265
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||| ||||       ||||||||||||||||||||     
T  31194117 catgttcccttcttctctcatatggcaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 31194216  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |  ||||| |||||||| ||||||||||||||| |||||||||||||||    
T  31194217 ccttaaatggagtaaatggagcttagcctaaatggagcatacccgaact 31194265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 8754785 - 8754659
Alignment:
Q  193 tcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagc 292  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||        |||||||||||| ||||||| | ||||||||||||||| |||     
T  8754785 tcacaacaaccttttattgttttttaatttaaaatttcaaccgttagatctttttttgccacatgtcttccatccaaaccctaaatagagtaaatggagt 8754686  T
Q  293 ttagcctaaatagagcatacccgaact 319  Q
    |||| |||||| ||| |||||||||||    
T  8754685 ttagtctaaatggaggatacccgaact 8754659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 179 - 313
Target Start/End: Original strand, 39634963 - 39635096
Alignment:
Q  179 cttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaat 278  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||       ||| ||| |||| ||||||| | ||||||    
T  39634963 cttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttacatatttttttgccgcatatcttacatccaaaccctaaat 39635062  T
Q  279 agagtaaattgagcttagcctaaatagagcatacc 313  Q
     ||||| ||  ||||||||||||||||||||||||    
T  39635063 -gagtatatgaagcttagcctaaatagagcatacc 39635096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 42546501 - 42546617
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||        | ||||||||||||||||||     
T  42546501 catgttccattcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatgtttttttgtcacatgtcttgcatccaaa 42546600  T
Q  271 ctctaaatagagtaaat 287  Q
    | |||||| ||||||||    
T  42546601 ccctaaatggagtaaat 42546617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 14076859 - 14076969
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||||||||| |||       |||||||||||||||||||| | |||||| |||||||| || |||||||||||| ||||    
T  14076859 ttgttttttaatttaaaatctcaaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagc 14076958  T
Q  309 atacccgaact 319  Q
    ||| |||||||    
T  14076959 atatccgaact 14076969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 31194072 - 31193966
Alignment:
Q  213 tttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatac 312  Q
    ||||||||||||||| ||||||||| ||||       |||||||||||||||||||| |  ||||| |||||||| ||||||||||||||| ||||||||    
T  31194072 tttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatac 31193973  T
Q  313 ccgaact 319  Q
    |||||||    
T  31193972 ccgaact 31193966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 36955484 - 36955594
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    |||||||||||||||||||  |||||||||||||       ||||||||||||||| |||| | ||||||||||||||| ||||||||||||||| ||||    
T  36955484 ttgttttttaatttaaaatcgcaaccgttagatatttttttgccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagc 36955583  T
Q  309 atacccgaact 319  Q
     ||||| ||||    
T  36955584 gtacccaaact 36955594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 32347049 - 32347189
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||  ||||||||||||||||||||| || | ||| ||||||||       | |||||||||| |||||||     
T  32347049 catgttcccttcttctctcatatcgcaacaatcttttattgttttttaatttaagatctaaacagttagatatttttttgtcacatgtcttacatccaaa 32347148  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    |  ||||| |||||| | ||||||||||||||| |||||||    
T  32347149 ccttaaatggagtaattggagcttagcctaaatggagcata 32347189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 14076816 - 14076746
Alignment:
Q  172 atgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||    
T  14076816 atgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccattagata 14076746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 304160 - 304093
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgtta 238  Q
    |||||| |||||||||||||||| |||||||  ||||||||||||| |||||||||| ||||||||||    
T  304160 catgttcccttcttctctcatattacaacaatcttttattgtttttaaatttaaaatctcaaccgtta 304093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 36955371 - 36955304
Alignment:
Q  252 cacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||||||||| | |||||| ||||||||  |||||||||||||| |||| ||||||||||    
T  36955371 cacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaact 36955304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 42546460 - 42546385
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagta 284  Q
    ||||||||||||||||||| ||||||||||||||       |||| ||||||||||||||| | |||||| |||||    
T  42546460 ttgttttttaatttaaaatctcaaccgttagatatttttttgccaaatgtcttgcatccaaaccctaaatggagta 42546385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 39634914 - 39634882
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagat 241  Q
    ||||||||||||||||||| |||||||||||||    
T  39634914 ttgttttttaatttaaaatctcaaccgttagat 39634882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 43449537 - 43449493
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagctt 294  Q
    ||||||||||||||||||||   ||||||||| ||||||||||||    
T  43449537 gccacatgtcttgcatccaaagcctaaatagactaaattgagctt 43449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 319
Target Start/End: Complemental strand, 50544398 - 50544257
Alignment:
Q  178 ccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaa 277  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||||||| ||| ||||||||||       |||||||||||||||||||| | |||||    
T  50544398 ccttcttctctcatatcgcaacaaccttttattattttttaatttaaaatctcatccgttagatatctttttgccacatgtcttgcatccaaaccctaaa 50544299  T
Q  278 tagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||| ||||| ||||||||||||||| ||||||| |||||||    
T  50544298 tagaataaatggagcttagcctaaatggagcatatccgaact 50544257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 23047105 - 23047212
Alignment:
Q  10 tattcttatctcaacaaaagtatattgagagagtgcttgatagatttaatatgaataattggaaatctgttgctattccaattgctgcgtatttcaagtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||| |||| |||||||| ||||||||||    
T  23047105 tattcttatctcaacaaaagtatattgagagagtgcttgataggtttaatatgaataattgtaaacctgtttctactccacttgctgcgcatttcaagtt 23047204  T
Q  110 atcttcag 117  Q
     |||||||    
T  23047205 gtcttcag 23047212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 180 - 319
Target Start/End: Complemental strand, 7062112 - 7061973
Alignment:
Q  180 ttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaata 279  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||| |||       |||||||||||||||||||| |  |||||     
T  7062112 ttcttctctcatatcacaacaaccttttattgatttttaattaaaaatctcaaccgttatatatttttttgccacatgtcttgcatccaaaccataaatg 7062013  T
Q  280 gagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||| ||| ||||||||||| |||||||||||||||    
T  7062012 gagtaaatagaggttagcctaaatggagcatacccgaact 7061973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 9551376 - 9551525
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgtttttt-aatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaa 269  Q
    |||||| ||||||||||||||| | ||||||| |||||||||||||| |||||||||| |||||||| |||||       |||| ||||||| |||||||    
T  9551376 catgttcccttcttctctcataacgcaacaaccttttattgtttttttaatttaaaatctcaaccgtgagatatttttttgccaaatgtcttccatccaa 9551475  T
Q  270 gctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    || |||||| |||||||| ||| |||| |||||| |||||||||||||||    
T  9551476 gccctaaatggagtaaatggagtttagtctaaatggagcatacccgaact 9551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 46993204 - 46993072
Alignment:
Q  183 ttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagag 282  Q
    |||||||||||| ||||||  |||||| |||||||||||||| || ||||||||||||||       || |||| |||||||||||| | |||||||||     
T  46993204 ttctctcatatcgcaacaatcttttatcgttttttaatttaacatctcaaccgttagatatttttttgctacatatcttgcatccaaaccctaaatagaa 46993105  T
Q  283 taaattgagcttagcctaaatagagcatacccg 315  Q
    ||||| ||||||| ||||||| |||||||||||    
T  46993104 taaatggagcttaacctaaatggagcatacccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 1025059 - 1025194
Alignment:
Q  172 atgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagc 271  Q
    ||||||| |||| |||||||||| |||| || |||||||||||||||||||||||| |||||||||| |||         ||||| |||||||||||| |    
T  1025059 atgtttctttctcctctcatatcgcaaccacattttattgttttttaatttaaaatctcaaccgttatatatttttttatcacatatcttgcatccaaac 1025158  T
Q  272 tctaaatagagtaaattgagcttagcctaaatagag 307  Q
    ||||||| ||||||||  ||||||||| ||||||||    
T  1025159 tctaaattgagtaaatgaagcttagccaaaatagag 1025194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 11790021 - 11790121
Alignment:
Q  178 ccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaa 277  Q
    |||||||||||||| || ||||||  |||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||| | |||||    
T  11790021 ccttcttctctcatgtcgcaacaatcttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaa 11790120  T
Q  278 t 278  Q
    |    
T  11790121 t 11790121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 17914941 - 17915048
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    |||||||||||||||| ||||||||| ||||       |||||||||||||||||||| || ||||| |||||||| || |||||||||||| |||||||    
T  17914941 ttttttaatttaaaatatcaaccgttggatatttttttgccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcata 17915040  T
Q  312 cccgaact 319  Q
     |||||||    
T  17915041 tccgaact 17915048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 26297461 - 26297356
Alignment:
Q  172 atgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagc 271  Q
    ||||||||||||||||||||||  ||||||| ||||||| |||||||||||||||| |||| |||||||||       |||||||||||||||||||| |    
T  26297461 atgtttccttcttctctcatattgcaacaaccttttattattttttaatttaaaatctcaatcgttagata-ttttttgccacatgtcttgcatccaaac 26297363  T
Q  272 tctaaat 278  Q
     ||||||    
T  26297362 cctaaat 26297356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 3556509 - 3556371
Alignment:
Q  176 ttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctcta 275  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||||| |||||||       || ||||||||||||||||| |  ||    
T  3556509 ttccttcttctctcatatcgcaacaaccttttattgt-ttttaatataaaatctcaacccttagatatttttttgcaacatgtcttgcatccaaacctta 3556411  T
Q  276 aatagagtaaattgagcttagcctaaatagagcatacccg 315  Q
    ||| ||||||||  || ||||| ||||| |||||| ||||    
T  3556410 aatggagtaaatgaagtttagcttaaatggagcatgcccg 3556371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 24673911 - 24674021
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||| |||||||||       | || ||||||| ||||||| |||||||||||||||||  || ||||||||||| ||||    
T  24673911 ttgttttttaatttaaaatctcaatcgttagatatttttttgtcatatgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagc 24674010  T
Q  309 atacccgaact 319  Q
    ||| |||||||    
T  24674011 atatccgaact 24674021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 54316060 - 54316125
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccg 315  Q
    |||||||||||||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||    
T  54316060 gccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccg 54316125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 209 - 318
Target Start/End: Complemental strand, 5465964 - 5465855
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| ||||||||||||||       |||||||||||| |||| || | ||||||  |||||||  | |||||||||||| ||||    
T  5465964 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagc 5465865  T
Q  309 atacccgaac 318  Q
    ||||||||||    
T  5465864 atacccgaac 5465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 23655200 - 23655100
Alignment:
Q  187 ctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaa 286  Q
    |||||||  ||| ||| ||||||| |||||||||||||||||||||||||||||||       ||| ||||||||||||||||||  ||||| |||||||    
T  23655200 ctcatattgcaaaaaccttttattattttttaatttaaaatttcaaccgttagatatttttttgccgcatgtcttgcatccaagccataaattgagtaaa 23655101  T
Q  287 t 287  Q
    |    
T  23655100 t 23655100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 11789970 - 11789860
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||||||||  |||       ||||||| ||||||||| || | |||||| ||||||||  ||||| |||||||| ||||    
T  11789970 ttgttttttaatttaaaatctcaaccgttgaatatttttttgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagc 11789871  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  11789870 atacccgaact 11789860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 32591309 - 32591361
Alignment:
Q  180 ttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaa 232  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  32591309 ttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaa 32591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 5466005 - 5466122
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||| ||||||||| ||||||  ||||||||||||||||||    ||  |||||||||||||       |||||||||||| |||||||     
T  5466005 catgttcccttcttttctcatatcgcaacaatcttttattgttttttaatt----atcccaaccgttagatatttttgtgccacatgtcttacatccaaa 5466100  T
Q  271 ctctaaatagagtaaattgagc 292  Q
    | ||||||||||||||| ||||    
T  5466101 ccctaaatagagtaaatagagc 5466122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 19037886 - 19037988
Alignment:
Q  183 ttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagag 282  Q
    |||||||||||| ||||||| ||||||||||||||||||||| || |||| ||||||||        ||||||||||||||||||||   |||||| |||    
T  19037886 ttctctcatatcgcaacaaccttttattgttttttaatttaacatctcaatcgttagat--ttttttgccacatgtcttgcatccaaatcctaaatggag 19037983  T
Q  283 taaat 287  Q
    |||||    
T  19037984 taaat 19037988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 35256201 - 35256143
Alignment:
Q  261 tgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    ||||||||| |||||||| ||||||||  ||||||| ||||||||||||||||||||||    
T  35256201 tgcatccaaactctaaatggagtaaatgcagcttagtctaaatagagcatacccgaact 35256143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 317
Target Start/End: Original strand, 23655261 - 23655366
Alignment:
Q  213 tttttaatttaaaatttcaaccgttagatannnnnnn-gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||| || | |||||| || |||||  |||||| ||||||| |||||||    
T  23655261 tttttaatttaaaatttcaaccgttagattttctttttgccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcata 23655360  T
Q  312 cccgaa 317  Q
    ||||||    
T  23655361 cccgaa 23655366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 21785891 - 21785982
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaat 303  Q
    |||||||||||||||| ||||  |||||||        |||||||||  ||||||||| |||||||| |||||||| |||||||||||||||    
T  21785891 ttttttaatttaaaatctcaattgttagatgtttttttgccacatgtaatgcatccaaactctaaatggagtaaatggagcttagcctaaat 21785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 42475976 - 42475893
Alignment:
Q  220 tttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaat 303  Q
    |||||||| |||| |||||||||       ||||| |||||||||||||| | |||||||||||||||  ||||||||||||||    
T  42475976 tttaaaatctcaatcgttagatatttttttgccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaat 42475893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 17914829 - 17914755
Alignment:
Q  204 ttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaat 278  Q
    |||||||||||||||||||||||| ||||| ||| ||||       |||||||||||||||||||| | ||||||    
T  17914829 ttttattgttttttaatttaaaatctcaactgttggatatttttttgccacatgtcttgcatccaaaccctaaat 17914755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 9551335 - 9551275
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaa 269  Q
    ||||||||||||||||||| ||||||||||||||       | ||||||||||||||||||    
T  9551335 ttgttttttaatttaaaatctcaaccgttagatatttttttgacacatgtcttgcatccaa 9551275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 32591207 - 32591165
Alignment:
Q  274 taaatagagtaaattgagcttagcctaaatagagcatacccga 316  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||    
T  32591207 taaatggagtaaatggagcttaacctaaatagagcatacccga 32591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 319
Target Start/End: Complemental strand, 21785749 - 21785720
Alignment:
Q  290 agcttagcctaaatagagcatacccgaact 319  Q
    ||||||||||||||||||||||||||||||    
T  21785749 agcttagcctaaatagagcatacccgaact 21785720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 19037833 - 19037801
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagat 241  Q
    ||||||||||||||||||| |||||||||||||    
T  19037833 ttgttttttaatttaaaatctcaaccgttagat 19037801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 8799465 - 8799318
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||| ||| ||| |||||||||||||||| ||||| ||||||||       ||||||||||||||||||||     
T  8799465 catgttcccttcttctctcatatcgcaacaaccttt-attattttttaatttaaaatctcaactgttagatatatttttgccacatgtcttgcatccaaa 8799367  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    | |||||| |||||||| |||| |||||||||| |||||||||||||||    
T  8799366 ccctaaatggagtaaatggagcctagcctaaatggagcatacccgaact 8799318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 43797501 - 43797361
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||| ||||       ||||||||||||||||||||     
T  43797501 catgttcccttcttctctcatatggcaacaaccttttattgttttttaatttaaaatctcaaccgttggatatttttttgccacatgtcttgcatccaaa 43797402  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    |  ||||| |||||||| ||||||||||||||| |||||||    
T  43797401 ccttaaatggagtaaatggagcttagcctaaatggagcata 43797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 4041373 - 4041483
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| ||||||||||||||       |||||||||||||||||||| | |||||| ||||||||  |||||||||||||| ||||    
T  4041373 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagc 4041472  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  4041473 atacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 38499970 - 38500121
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttt----tttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatc 266  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||    ||||||||||||| ||||| ||||||||        ||||||||||| ||||    
T  38499970 catgttcccttcttctctcatatcgcaacaaccttttattgtttgttttttaatttaaaatctcaactgttagatattttttt-ccacatgtcttacatc 38500068  T
Q  267 caagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    ||| | |||| | |||||||| ||||||||||||||| |||||||||||||||    
T  38500069 caaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaact 38500121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 53197147 - 53197279
Alignment:
Q  181 tcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatag 280  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| |  || ||||||||       |||||||||||||||||||| | |||||| |    
T  53197147 tcttctctcatatcgcaacaaccttttattgttttttaatttaaaatcttgac-gttagatatttttt-gccacatgtcttgcatccaaaccctaaatgg 53197244  T
Q  281 agtaaattgagcttagcctaaatagagcatacccg 315  Q
    |||||||  |||||||||||||| |||||||||||    
T  53197245 agtaaatgaagcttagcctaaatggagcatacccg 53197279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 179 - 319
Target Start/End: Original strand, 48346138 - 48346279
Alignment:
Q  179 cttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttag-atannnnnnngccacatgtcttgcatccaagctctaaa 277  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||| |||||||||||  |        ||||||||| ||||||||||  ||||||    
T  48346138 cttcttctctcatatcgcaacaaccttttactgttttttaatttaaaatctcaaccgttagtttttttttttgccacatgttttgcatccaaattctaaa 48346237  T
Q  278 tagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    || ||||||| || || | ||||||| |||||||||||||||    
T  48346238 taaagtaaatagaactcaacctaaatggagcatacccgaact 48346279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 29828826 - 29828759
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgtta 238  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  29828826 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgtta 29828759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 53197099 - 53196989
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| ||||||||||||||       ||||||||| |||||||||| | |||||||||||||||  || ||||| ||||| | ||    
T  53197099 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggc 53197000  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  53196999 atacccgaact 53196989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 4041325 - 4041261
Alignment:
Q  178 ccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||||| ||||||||||||||    
T  4041325 ccttcttctctcatatcgcaacaatcttttattgttttttaatttaaaatctcaaccgttagata 4041261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 38499889 - 38499820
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    ||||||||||||| |||||| | |||||| |||||||| ||||||||||||||| |||||||||||||||    
T  38499889 gccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaact 38499820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 46883553 - 46883452
Alignment:
Q  182 cttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaataga 281  Q
    |||| |||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||       |||||||||||| ||||||| | |||||| ||    
T  46883553 cttccctcatattgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccctaaatgga 46883454  T
Q  282 gt 283  Q
    ||    
T  46883453 gt 46883452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 43797807 - 43797909
Alignment:
Q  183 ttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagag 282  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||| ||| ||||||||||       |||||||||||||||||||||| |||||| |||    
T  43797807 ttctatcatatcgcaacaaccttttattg-tttttaatttaaaatctcatccgttagata-ttttttgccacatgtcttgcatccaagccctaaatggag 43797904  T
Q  283 taaat 287  Q
    |||||    
T  43797905 taaat 43797909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 46883602 - 46883685
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagc 292  Q
    ||||||||||||||||||| ||||||||||||||       |||||||||||||||||||| | |||||| |||||||| ||||    
T  46883602 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 29828871 - 29828973
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| ||||||||||||||       ||||||| |||| |||||||   |||||| || ||||| ||||||||| ||||||||||    
T  29828871 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaatagagc 29828970  T
Q  309 ata 311  Q
    |||    
T  29828971 ata 29828973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 43797546 - 43797646
Alignment:
Q  213 tttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatac 312  Q
    ||||||||||||||| | ||||||| ||||       | |||||||||| ||||||| | ||||||||||||||| || |||||||||||| ||||||||    
T  43797546 tttttaatttaaaatcttaaccgttggatacttttttgtcacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatac 43797645  T
Q  313 c 313  Q
    |    
T  43797646 c 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 8799506 - 8799589
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagc 292  Q
    ||||||||||||||||||| |||||||||| |||       ||||||||||||||||| || | |||||| |||||||| ||||    
T  8799506 ttgttttttaatttaaaatctcaaccgttatatatttttttgccacatgtcttgcatctaaaccctaaatggagtaaatggagc 8799589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 20383220 - 20383258
Alignment:
Q  204 ttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  20383220 ttttatttttttttaatttaaaatctcaaccgttagata 20383258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 20383179 - 20383143
Alignment:
Q  173 tgtttccttcttctctcatatcacaacaactttttat 209  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  20383179 tgttcccttcttctctcatatcacaacaacattttat 20383143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 43797751 - 43797694
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaa 269  Q
    ||||||||||||||||||||||| |||||||       |||||||||||| |||||||    
T  43797751 ttttttaatttaaaatttcaaccattagatatttttttgccacatgtcttacatccaa 43797694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 34970134 - 34969987
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||     
T  34970134 catgttcccttcttctctcatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttaccacatgtcttgcatccaaa 34970035  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaac 318  Q
      |||||| |||||||| ||| ||| |||||||  |||||||||||||    
T  34970034 tcctaaattgagtaaatggagtttaacctaaatgaagcatacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 33156604 - 33156457
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||        |  | ||||||| |||||||     
T  33156604 catgttcccttcttctctcatatcacaacaactttttattgttttttaatttaaaatctcaatcgttagattttgttttgttagatgtcttacatccaaa 33156505  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||| |||||||| |||| |||||| ||| |||||||||||||||    
T  33156504 ctctaaatggagtaaatggagcctagcct-aatggagcatacccgaact 33156457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 49776984 - 49777117
Alignment:
Q  180 ttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaata 279  Q
    ||||||| ||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||       | |||||||||||||||||| | |||||||    
T  49776984 ttcttctttcatattgcaacaaccttttattgttttttaatttaaaatctcaaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaata 49777083  T
Q  280 gagtaaattgagcttagcctaaatagagcatacc 313  Q
    || ||||| ||| ||||||||||| |||||||||    
T  49777084 gaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 27171951 - 27172049
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaa 269  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||       |||||||||||| |||||||    
T  27171951 catgttcccttcttctctcatatcacaacaaccttttattgttttttaattgaaaatctcaaccgttagatatttttttgccacatgtcttacatccaa 27172049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 24883110 - 24882972
Alignment:
Q  179 cttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaat 278  Q
    |||||||||||||||| ||||||| |||||||| |||| |||||||||| |||||||||| ||        ||||| |||||||||||||| | ||||||    
T  24883110 cttcttctctcatatcgcaacaaccttttattgatttt-aatttaaaatctcaaccgttacat-tttttttgccacgtgtcttgcatccaaaccctaaat 24883013  T
Q  279 agagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
     |||||||| ||| ||||||||||| |||||||||||||||    
T  24883012 ggagtaaatggagattagcctaaatggagcatacccgaact 24882972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 24883156 - 24883268
Alignment:
Q  207 tattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaataga 306  Q
    |||| |||||||||||||||| ||||||||||||||       ||||||| |||||||||||| | |||||| |||||||| ||||||||||||||| ||    
T  24883156 tatttttttttaatttaaaatctcaaccgttagatatttttttgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatgga 24883255  T
Q  307 gcatacccgaact 319  Q
     ||||||||||||    
T  24883256 acatacccgaact 24883268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 33401006 - 33400857
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata--nnnnnnngccacatgtcttgcatcca 268  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||| |||||||         |||||||| ||| ||||||    
T  33401006 catgttcccttcttctctcatatcgcaacaactttttattgttttttagtttaaaatcttaaccattagatacttttttttgccacatgccttacatcca 33400907  T
Q  269 agctctaaatagagtaaattgagcttagcctaaatagagcatacccgaac 318  Q
    | |  ||||| |||||||| ||||||||| ||||| |||||| |||||||    
T  33400906 aaccttaaatggagtaaatggagcttagcttaaatggagcatgcccgaac 33400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 42082968 - 42083039
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||    
T  42082968 catgttcccttcttctctcatatcacaacaaccttttattattttataatttaaaatctcaaccgttagata 42083039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 171 - 313
Target Start/End: Complemental strand, 5772057 - 5771915
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| ||||||| ||| ||||| ||||||| |||||| || |||||||||||||| ||||||||||||||       |||| || |||| ||| |||     
T  5772057 catgttcccttcttttcttatatcgcaacaaccttttatagtcttttaatttaaaatctcaaccgttagatatttttttgccatatatcttacattcaaa 5771958  T
Q  271 ctctaaatagagtaaattgagcttagcctaaatagagcatacc 313  Q
    |||||||| ||||||||  ||||||| |||||| |||||||||    
T  5771957 ctctaaatggagtaaatgaagcttagtctaaatggagcatacc 5771915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 3385452 - 3385309
Alignment:
Q  179 cttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata---nnnnnnngccacatgtcttgcatccaagctcta 275  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||| | ||||||||||||          |||||||||||| ||||||| | |||    
T  3385452 cttcttctctcatatcgcaacaaccttttattattttttaatttaaaatcttaaccgttagatattttttttttgccacatgtcttacatccaaacccta 3385353  T
Q  276 aatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    ||| | |||||   ||||||||||||||  ||||||||||||||    
T  3385352 aatggggtaaacgaagcttagcctaaatgaagcatacccgaact 3385309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 13947074 - 13947195
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    ||||||||||||||||||  |||| ||||||| |||||||||||||||||||||||| |||||||||| |||        ||||||||||| |||||||     
T  13947074 catgtttccttcttctcttgtatcgcaacaaccttttattgttttttaatttaaaatatcaaccgttacatatttttttaccacatgtcttacatccaaa 13947173  T
Q  271 ctctaaatagagtaaattgagc 292  Q
    | |||||| || ||||| ||||    
T  13947174 cgctaaatggaataaatggagc 13947195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 38338816 - 38338745
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagata 242  Q
    |||||| |||| |||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  38338816 catgttcccttattctcttatatcgcaacaaccttttattgttttttaatttaaaatctcaaccgttagata 38338745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 3385504 - 3385611
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcata 311  Q
    |||||||||||||||| ||||||||||||||        |||||| |||| ||||||| | |||||| |||||||| |||||| |||||||| |||||||    
T  3385504 ttttttaatttaaaatctcaaccgttagatatttttttaccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcata 3385603  T
Q  312 cccgaact 319  Q
    ||||||||    
T  3385604 cccgaact 3385611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 27171910 - 27171800
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| || |||||||||||       |||||||||||| ||||||| |  ||||| ||||||||  ||||||||||||||  |||    
T  27171910 ttgttttttaatttaaaatctcgaccgttagatatttttttgccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagc 27171811  T
Q  309 atacccgaact 319  Q
    |||||||||||    
T  27171810 atacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 39781217 - 39781285
Alignment:
Q  172 atgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagat 241  Q
    ||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||    
T  39781217 atgttcccttcttctctcatatcgcaacaaccttt-attgttttttaatttaaaatctcaaccgttagat 39781285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 33156645 - 33156747
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| |||||||||||||        ||||||||||||| |||||| | |||||| ||||||||  |||||||||||||| ||||    
T  33156645 ttgttttttaatttaaaatctcaaccgttagat-tttttttgccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagc 33156743  T
Q  309 atac 312  Q
    ||||    
T  33156744 atac 33156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 37948940 - 37949047
Alignment:
Q  171 catgtttccttcttctctcatatcacaacaactttttattgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaag 270  Q
    |||||| | ||||||||||||||| ||||||| |||||||  ||||||||||||||| | |||| |||||||       |||||||||||| ||||||||    
T  37948940 catgttcctttcttctctcatatcgcaacaaccttttatttatttttaatttaaaatcttaaccattagatatttgtttgccacatgtcttacatccaag 37949039  T
Q  271 ctctaaat 278  Q
    | ||||||    
T  37949040 ccctaaat 37949047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 49776888 - 49776820
Alignment:
Q  251 ccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||||||||||   |||||| ||||||||  |||||||| ||||| |||||||||||||||    
T  49776888 ccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaact 49776820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 33401087 - 33401156
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||| |||| || |  |||||| |||||||||||||||||||||||  |||||| |||||||    
T  33401087 gccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcatatccgaact 33401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 34622556 - 34622625
Alignment:
Q  250 gccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagcatacccgaact 319  Q
    |||||||||||||||| ||| |  ||||| |||||| | |||||||| |||||| |||||||||||||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaact 34622625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 37948899 - 37948797
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaatagagtaaattgagcttagcctaaatagagc 308  Q
    ||||||||||||||||||| ||||||||||||||       || ||||||||| ||||||| |  ||||| ||||||||  |||||| | ||||| ||||    
T  37948899 ttgttttttaatttaaaatctcaaccgttagatatttttttgcaacatgtcttacatccaaaccttaaattgagtaaatgaagcttaacttaaatggagc 37948800  T
Q  309 ata 311  Q
    |||    
T  37948799 ata 37948797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 13947033 - 13946964
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaagctctaaat 278  Q
    ||||||||||||||||||| ||||||||||||||       |||||||||||| ||||||| | ||||||    
T  13947033 ttgttttttaatttaaaatctcaaccgttagatatttttttgccacatgtcttacatccaaaccctaaat 13946964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 43297041 - 43297101
Alignment:
Q  209 ttgttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaa 269  Q
    ||||||||||||||||||| ||||||||||||||       | ||||||||||||||||||    
T  43297041 ttgttttttaatttaaaatctcaaccgttagatatttttttggcacatgtcttgcatccaa 43297101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 38338860 - 38338917
Alignment:
Q  212 ttttttaatttaaaatttcaaccgttagatannnnnnngccacatgtcttgcatccaa 269  Q
    |||||||||||||||||||||| ||||||||       |||||||||||| |||||||    
T  38338860 ttttttaatttaaaatttcaactgttagatatttttttgccacatgtcttacatccaa 38338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 39781291 - 39781323
Alignment:
Q  287 ttgagcttagcctaaatagagcatacccgaact 319  Q
    ||||||||||||||||| |||||||||||||||    
T  39781291 ttgagcttagcctaaatggagcatacccgaact 39781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University