View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21572_low_3 (Length: 542)
Name: NF21572_low_3
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 471
Target Start/End: Complemental strand, 25727798 - 25727339
Alignment:
| Q |
14 |
gagatgaacacagcatttgatgttgtatattatccgacagctagtggttggcgtgattttgtggtggatgctatgactgttgacgatgccatgaaaattg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25727798 |
gagaagaacacagcatttgatgttgtgtattatccgacagctagtggttggcgtgattttgtggtggatgctaagactgttgacgatgccatgaaaattg |
25727699 |
T |
|
| Q |
114 |
gttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagggaacaatctcttttgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25727698 |
gttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgacaatttctcagcttaagggaacaatctcttttgt |
25727599 |
T |
|
| Q |
214 |
ctttaaccattcttctaaagtccctaattggcgcatacttgaggtacatatgctttcttaatttggtcttattatatttcaattttttatagttgaatcc |
313 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||| | |
|
|
| T |
25727598 |
ctataaccattcttctaatgtccctaattggcgcatgcttgaggtacatatgctttcttcatttggtcttgttatatttcaagtgtttatagttgaattc |
25727499 |
T |
|
| Q |
314 |
ataaaaagattatttgcttgataaatatgagtgttgaaattaatacatgaaactataattagatgatacttgatgagaaagaaaattgtaacagaatctc |
413 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25727498 |
ataaaaagattgtttgattgataaatatgagtgttgaaattaatacatgaaactataattagatgatacttgatgagacagaaaattgtaacagaatctc |
25727399 |
T |
|
| Q |
414 |
catctccaacattatttattcccattgttcttgcacttgatagata--tcccatgacact |
471 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25727398 |
catctccatcattattaattcccattgttcttgcacttgatagatatctcccatgacact |
25727339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 25225450 - 25225862
Alignment:
| Q |
14 |
gagatgaacacagcatttgatgttgtatattatccgacagctagtggttggcgtgattttgtggtggatgctatgactgttgacgatgccatgaaaattg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25225450 |
gagaagaacacagcatttgatgttgtgtattatccgacagctagtggttggcgtgattttgtggtggatgctaagactgttgacgatgccatgaaaattg |
25225549 |
T |
|
| Q |
114 |
gttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagggaacaatctcttttgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25225550 |
gttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgacaatttctcagcttaagggaacaatctcttttgt |
25225649 |
T |
|
| Q |
214 |
ctttaaccattcttctaaagtccctaattggcgcatacttgaggtacatatgctttcttaatttggtcttattatatttcaattttttatagttgaatcc |
313 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
25225650 |
ctttaaccattcttctaacgtccctaattggcgcatacttgaggtacatatgctttcttcatttggtcttattatatttcaagtgtttatagttgaatcc |
25225749 |
T |
|
| Q |
314 |
ataaaaagattatttgcttgataaatatgagtgttgaaattaatacatgaaactataattagatgatacttgatgagaaagaaaattgtaacagaatctc |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25225750 |
ataaaaagattatttgattgataaatatgagtgttgaagttaatacatgaaactataattagatgatacttgatgagacagaaaattgtaacagaatctc |
25225849 |
T |
|
| Q |
414 |
catctccaacatt |
426 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
25225850 |
catctgcaacatt |
25225862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 25289606 - 25290018
Alignment:
| Q |
14 |
gagatgaacacagcatttgatgttgtatattatccgacagctagtggttggcgtgattttgtggtggatgctatgactgttgacgatgccatgaaaattg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25289606 |
gagaagaacacagcatttgatgttgtgtattatccgacagctagtggttggcgtgattttgtggtggatgctaagactgttgacgatgccatgaaaattg |
25289705 |
T |
|
| Q |
114 |
gttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagggaacaatctcttttgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25289706 |
gttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgacaatttctcagcttaagggaacaatctcttttgt |
25289805 |
T |
|
| Q |
214 |
ctttaaccattcttctaaagtccctaattggcgcatacttgaggtacatatgctttcttaatttggtcttattatatttcaattttttatagttgaatcc |
313 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
25289806 |
ctttaaccattcttctaacgtccctaattggcgcatacttgaggtacatatgctttcttcatttggtcttattatatttcaagtgtttatagttgaatcc |
25289905 |
T |
|
| Q |
314 |
ataaaaagattatttgcttgataaatatgagtgttgaaattaatacatgaaactataattagatgatacttgatgagaaagaaaattgtaacagaatctc |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25289906 |
ataaaaagattatttgattgataaatatgagtgttgaagttaatacatgaaactataattagatgatacttgatgagacagaaaattgtaacagaatctc |
25290005 |
T |
|
| Q |
414 |
catctccaacatt |
426 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
25290006 |
catctgcaacatt |
25290018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 25222054 - 25221882
Alignment:
| Q |
98 |
gatgccatgaaaattggttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagg |
197 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| || ||| ||||||||||| ||||||||||||||||||| || | || ||| | ||||| |
|
|
| T |
25222054 |
gatgccatgaagattggttgggaatctggaatgagagtcaaacttactttgaagaaagatgaatcttcaaattcaaa---gacatattatcatcctaagg |
25221958 |
T |
|
| Q |
198 |
gaacaatctcttttgtctttaaccattcttctaaagtccctaattggcgcatacttgaggtacatatgctttctta |
273 |
Q |
| |
|
| ||||||||| ||||||||| |||||| ||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
25221957 |
ggacaatctctactgtctttaattattcttgtaatgtccctaattggcgcattcttgaggtgcatatgctttctta |
25221882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 25286209 - 25286037
Alignment:
| Q |
98 |
gatgccatgaaaattggttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagg |
197 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||| || ||| ||||||||||| ||||||||||||||||||| || | || ||| | ||||| |
|
|
| T |
25286209 |
gatgccatgaagattggttgggaatctggaatgagagtcaaacttactttgaagaaagatgaatcttcaaattcaaa---gacatattatcatcctaagg |
25286113 |
T |
|
| Q |
198 |
gaacaatctcttttgtctttaaccattcttctaaagtccctaattggcgcatacttgaggtacatatgctttctta |
273 |
Q |
| |
|
| ||||||||| ||||||||| |||||| ||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
25286112 |
ggacaatctctactgtctttaattattcttgtaatgtccctaattggcgcattcttgaggtgcatatgctttctta |
25286037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 103 - 295
Target Start/End: Complemental strand, 26097249 - 26097057
Alignment:
| Q |
103 |
catgaaaattggttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagggaaca |
202 |
Q |
| |
|
|||||| ||| |||||| ||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||| | ||| ||||| | ||| ||| |
|
|
| T |
26097249 |
catgaagattagttggacatctggaatgaaagtcaagcttcctttgaagaaagaagaatcttcaaattcaaagatgatattttatcagcctcgggggaca |
26097150 |
T |
|
| Q |
203 |
atctcttttgtctttaaccattcttctaaagtccctaattggcgcatacttgaggtacatatgctttcttaatttggtcttattatatttcaa |
295 |
Q |
| |
|
| ||| ||| | ||| | ||||||| ||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
26097149 |
aactcagatgtttataaagctccttctaatgtccctaattggcgcatgcttcaggtacatacgctttcttcttttggtcttattatatttcaa |
26097057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 468 - 525
Target Start/End: Original strand, 25225920 - 25225977
Alignment:
| Q |
468 |
cactaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25225920 |
cactaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
25225977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 468 - 525
Target Start/End: Original strand, 25290076 - 25290133
Alignment:
| Q |
468 |
cactaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25290076 |
cactaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
25290133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 468 - 525
Target Start/End: Complemental strand, 25727249 - 25727192
Alignment:
| Q |
468 |
cactaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25727249 |
cactaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
25727192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 25443086 - 25442980
Alignment:
| Q |
98 |
gatgccatgaaaattggttggaaatctggaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagg |
197 |
Q |
| |
|
||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||| | | | |
|
|
| T |
25443086 |
gatgctatgaagattggttgggcatctggaatgagagtgaagcttcctttgaagattgatgaatcttcaaattcaaagatgacattttttcagcctcaag |
25442987 |
T |
|
| Q |
198 |
gaacaat |
204 |
Q |
| |
|
||||||| |
|
|
| T |
25442986 |
gaacaat |
25442980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 475 - 521
Target Start/End: Complemental strand, 25221364 - 25221318
Alignment:
| Q |
475 |
aaatagttatgaagtttaagaaccttctaagcctttctcattgtaaa |
521 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25221364 |
aaatagtaatgaagtttaagaaccttctaagcatttctcattgtaaa |
25221318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 475 - 521
Target Start/End: Complemental strand, 25285519 - 25285473
Alignment:
| Q |
475 |
aaatagttatgaagtttaagaaccttctaagcctttctcattgtaaa |
521 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25285519 |
aaatagtaatgaagtttaagaaccttctaagcatttctcattgtaaa |
25285473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 25090366 - 25090545
Alignment:
| Q |
26 |
gcatttgatgttgtatattatccgacagctagtggttggcgtgattttgtggtggatgctatgactgttgacgatgccatgaaaattggttggaaatctg |
125 |
Q |
| |
|
|||||| | ||||| ||||||||||| |||| | ||| ||||||||||||||||||| | |||||| || || ||||| | ||||||| ||| || |
|
|
| T |
25090366 |
gcatttcaagttgtgtattatccgacggctaat---tggtgtgattttgtggtggatgcgagtgttgttgatgaggctatgaagaatggttgggaatttg |
25090462 |
T |
|
| Q |
126 |
gaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagggaacaatctct |
208 |
Q |
| |
|
||||| || | ||||||| |||||| ||| || ||||||||||||||||| || | || ||||| |||||| ||||||||| |
|
|
| T |
25090463 |
gaatgggaatcaagcttcgtttgaatgaatttgcatcttcaaattcaaagaagacatattatcagcctaaggggacaatctct |
25090545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 25148336 - 25148515
Alignment:
| Q |
26 |
gcatttgatgttgtatattatccgacagctagtggttggcgtgattttgtggtggatgctatgactgttgacgatgccatgaaaattggttggaaatctg |
125 |
Q |
| |
|
|||||| | ||||| ||||||||||| |||| | ||| ||||||||||||||||||| | |||||| || || ||||| | ||||||| ||| || |
|
|
| T |
25148336 |
gcatttcaagttgtgtattatccgacggctaat---tggtgtgattttgtggtggatgcgagtgttgttgatgaggctatgaagaatggttgggaatttg |
25148432 |
T |
|
| Q |
126 |
gaatgagagtgaagcttcctttgaagaaatatgaatcttcaaattcaaagatgaaaatttctcagcttaagggaacaatctct |
208 |
Q |
| |
|
||||| || | ||||||| |||||| ||| || ||||||||||||||||| || | || ||||| |||||| ||||||||| |
|
|
| T |
25148433 |
gaatgggaatcaagcttcgtttgaatgaatttgcatcttcaaattcaaagaagacatattatcagcctaaggggacaatctct |
25148515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 25221661 - 25221601
Alignment:
| Q |
410 |
tctccatctccaacattatttattcccattgttcttgcacttgatagatatcccatgacact |
471 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
25221661 |
tctccatctccaacattattatttccc-ttgttcttgcacttgatagacatctcataacact |
25221601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 25285816 - 25285756
Alignment:
| Q |
410 |
tctccatctccaacattatttattcccattgttcttgcacttgatagatatcccatgacact |
471 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
25285816 |
tctccatctccaacattattatttccc-ttgttcttgcacttgatagacatctcataacact |
25285756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 25091461 - 25091516
Alignment:
| Q |
470 |
ctaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
525 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
25091461 |
ctaagaaatagttatgataattaagaaccttctaagcatttctcattgtgaatact |
25091516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 25149431 - 25149486
Alignment:
| Q |
470 |
ctaaaaaatagttatgaagtttaagaaccttctaagcctttctcattgtaaatact |
525 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
25149431 |
ctaagaaatagttatgataattaagaaccttctaagcatttctcattgtgaatact |
25149486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 26100632 - 26100573
Alignment:
| Q |
236 |
cctaattggcgcatacttgaggtacatatgctttcttaatttggtcttattatatttcaa |
295 |
Q |
| |
|
|||||||||||||| ||| |||| ||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
26100632 |
cctaattggcgcattcttcaggtgcatctgctttcttcttttggtcttattatagttcaa |
26100573 |
T |
|
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