View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21572_low_4 (Length: 538)

Name: NF21572_low_4
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21572_low_4
NF21572_low_4
[»] chr3 (11 HSPs)
chr3 (1-196)||(2736445-2736640)
chr3 (1-196)||(40925491-40925686)
chr3 (1-196)||(22126557-22126752)
chr3 (9-192)||(8425373-8425556)
chr3 (6-160)||(22509689-22509843)
chr3 (4-160)||(39621899-39622055)
chr3 (192-238)||(22126745-22126791)
chr3 (192-238)||(2736406-2736452)
chr3 (192-238)||(40925452-40925498)
chr3 (108-157)||(18323042-18323091)
chr3 (108-157)||(20553582-20553631)
[»] chr5 (9 HSPs)
chr5 (1-196)||(22270397-22270592)
chr5 (1-183)||(35635121-35635306)
chr5 (1-183)||(38395182-38395367)
chr5 (22-160)||(14009450-14009588)
chr5 (6-160)||(23121086-23121240)
chr5 (10-162)||(37259041-37259192)
chr5 (6-160)||(28313263-28313417)
chr5 (193-238)||(22270585-22270630)
chr5 (78-131)||(203806-203859)
[»] chr7 (6 HSPs)
chr7 (1-196)||(31421814-31422009)
chr7 (1-192)||(8363587-8363778)
chr7 (9-192)||(37126483-37126666)
chr7 (6-160)||(41596600-41596754)
chr7 (192-238)||(31421775-31421821)
chr7 (84-141)||(18294984-18295041)
[»] chr8 (13 HSPs)
chr8 (5-196)||(42809474-42809665)
chr8 (1-196)||(33363537-33363731)
chr8 (337-480)||(27670252-27670395)
chr8 (247-338)||(27670462-27670553)
chr8 (25-187)||(32382060-32382222)
chr8 (25-187)||(32436015-32436177)
chr8 (6-160)||(12868415-12868569)
chr8 (1-176)||(18427518-18427685)
chr8 (30-160)||(42466248-42466378)
chr8 (82-169)||(42471607-42471694)
chr8 (192-238)||(42809435-42809481)
chr8 (192-238)||(33363498-33363544)
chr8 (82-169)||(42478862-42478949)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-196)||(42145-42339)
scaffold0005 (192-238)||(42106-42152)
[»] chr4 (13 HSPs)
chr4 (1-196)||(14797392-14797586)
chr4 (1-170)||(37466047-37466216)
chr4 (9-192)||(55404881-55405064)
chr4 (76-160)||(14461521-14461605)
chr4 (76-169)||(2664959-2665052)
chr4 (117-190)||(44504660-44504733)
chr4 (9-113)||(16400990-16401094)
chr4 (9-91)||(27599193-27599275)
chr4 (192-238)||(14797579-14797625)
chr4 (9-91)||(53816272-53816354)
chr4 (108-157)||(17625475-17625524)
chr4 (9-88)||(43335462-43335541)
chr4 (416-469)||(41802778-41802831)
[»] chr1 (4 HSPs)
chr1 (24-187)||(27132885-27133048)
chr1 (9-196)||(51065114-51065300)
chr1 (13-171)||(25537051-25537209)
chr1 (10-148)||(11052607-11052745)
[»] chr6 (4 HSPs)
chr6 (9-192)||(97109-97292)
chr6 (1-192)||(27156560-27156751)
chr6 (22-148)||(10895131-10895257)
chr6 (6-160)||(15667192-15667346)
[»] chr2 (7 HSPs)
chr2 (10-182)||(9844878-9845050)
chr2 (22-192)||(5088533-5088703)
chr2 (6-160)||(43525206-43525360)
chr2 (22-160)||(12055146-12055284)
chr2 (81-192)||(41317963-41318070)
chr2 (108-157)||(1285664-1285713)
chr2 (77-148)||(34429173-34429243)
[»] scaffold0024 (1 HSPs)
scaffold0024 (81-183)||(12024-12126)
[»] scaffold0129 (1 HSPs)
scaffold0129 (78-160)||(7712-7794)
[»] scaffold0026 (1 HSPs)
scaffold0026 (76-115)||(92373-92412)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2736640 - 2736445
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2736640 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 2736541  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2736540 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 2736445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 40925686 - 40925491
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925686 ttgattcataactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 40925587  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925586 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 40925491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 22126557 - 22126752
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  22126557 ttgattcagaactaatacattcactaatatccttttcgatgtaaactgacatgctatttgctaaaaacccatgtcccatctcttttctcaacttagattt 22126656  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22126657 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 22126752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 8425373 - 8425556
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattt 108  Q
    ||||||||| |  ||||||| |||||||| || |||||||||||||||| ||||| | ||||| |   |||||||||||||||||| || ||||||||||    
T  8425373 gaactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggctcatcttgtttctcaacttggacttgataattt 8425472  T
Q  109 tcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagt 192  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| ||| ||||    
T  8425473 tcattgctgaaaaagatctttctgttgtggctgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaagaagt 8425556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 22509689 - 22509843
Alignment:
Q  6 tcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 105  Q
    |||||||||||||   ||||||||||||||||||| ||||||| |||| |||    || |||||||  | ||||||||||||||||| |||  |||||||    
T  22509689 tcagaactaatacttgcactaatatccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataa 22509788  T
Q  106 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    | |||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  22509789 tcttcattgctgaaaaagatctctcagttgtggctgtagaaattggaagagtcat 22509843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 39622055 - 39621899
Alignment:
Q  4 attcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgat 103  Q
    |||||||||||||||   ||||||| ||||||||||| | ||| | ||||||||    || |||||||  | ||||||||||||||||| |||  |||||    
T  39622055 attcagaactaatacttgcactaatttccctttcgatattaaccgtcatgctatcatttagaaacccacttcccatcttgtttctcaacctagtcttgat 39621956  T
Q  104 aattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    ||| |||||||| ||||||||||| |||||||||||||||||||  |||||||||||    
T  39621955 aatcttcattgccgaaaaagatctctcagttgtggctgtagaaattggaagagtcat 39621899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 22126791 - 22126745
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  22126791 tgtttggctgctgccattcctgccaatggacaacccaaaaaacactt 22126745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 2736406 - 2736452
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  2736406 tgtttggctgctgccgttcctgccaatggacaacccaaaaaacactt 2736452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 40925452 - 40925498
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||    
T  40925452 tgtttggctgctgccattcctgccaatgggcaacccaaaaaacactt 40925498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 18323091 - 18323042
Alignment:
Q  108 ttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagt 157  Q
    |||||||||||||| |||||||| || || | ||||||||||||||||||    
T  18323091 ttcattgctgaaaatgatctttctgtagtagttgtagaaaccggaagagt 18323042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 20553582 - 20553631
Alignment:
Q  108 ttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagt 157  Q
    ||||||| |||||| |||||||| || || ||||||||||||||||||||    
T  20553582 ttcattgttgaaaatgatctttctgtagtagctgtagaaaccggaagagt 20553631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 22270397 - 22270592
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22270397 ttgattcagaactaatacactcactaatatccctttcaatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 22270496  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22270497 aataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 22270592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 35635121 - 35635306
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaa---acccatgttccatcttgtttctcaacttaga 97  Q
    |||| ||||||||||||||  ||||||| |||||||  || |||||| ||||| ||| |||||  |   ||||| ||  |||||||||| ||||||||||    
T  35635121 ttgactcagaactaatacatgcactaatttcccttttaatataaactaacatgttatctgctatcagtaacccaagtctcatcttgtttttcaacttaga 35635220  T
Q  98 tttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaa 183  Q
     ||||||||| ||||||||||||||||||||||| || || | ||||||||  |||| ||||||| ||||||||||||||||||||    
T  35635221 cttgataattctcattgctgaaaaagatctttcaattatgacggtagaaactagaagggtcataataagacgcaacaacctatcaa 35635306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 38395182 - 38395367
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaa---acccatgttccatcttgtttctcaacttaga 97  Q
    |||| ||||||||||||||  ||||||| |||||||  || |||||| ||||| ||| |||||  |   ||| | ||  |||||||||||||||||| ||    
T  38395182 ttgactcagaactaatacatgcactaatttcccttttaatataaactaacatgttatctgctatcagtaaccgaagtctcatcttgtttctcaactttga 38395281  T
Q  98 tttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaa 183  Q
     ||||||||||||||||||||||||||||||||| || || | |||||||   |||| ||||||| ||||||||||||||||||||    
T  38395282 cttgataattttcattgctgaaaaagatctttcaattatgacggtagaaattagaagggtcataataagacgcaacaacctatcaa 38395367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 14009588 - 14009450
Alignment:
Q  22 cactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaa 121  Q
    ||||||| ||||||| ||| ||||||| |||| |||    || |||||||  | ||||||||||||||||| |||  |||||||| ||||||||||||||    
T  14009588 cactaatttcccttttgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataatcttcattgctgaaaa 14009489  T
Q  122 agatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  14009488 agatctctcagttgtggctgtagaaactggaagagtcat 14009450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 23121086 - 23121240
Alignment:
Q  6 tcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 105  Q
    |||||||||||||   ||||||| ||||||||||| ||||||| |||| |||    || |||||||  | ||||||||||||||||| |||  |||||||    
T  23121086 tcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataa 23121185  T
Q  106 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    | ||| |||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  23121186 tcttcgttgctgaaaaagatctctcagttgttgctgtagaaactggaagagtcat 23121240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 37259192 - 37259041
Alignment:
Q  10 aactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataatttt 109  Q
    ||||||||||  ||| ||| ||| |||| || ||||||||||||||||   ||| ||||||| || ||||||| ||| ||||||| || || ||||||||    
T  37259192 aactaatacatgcacaaatttccttttcaatataaactgacatgctatca-ctagaaacccaggtcccatcttatttatcaactttgacttaataatttt 37259094  T
Q  110 cattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataa 162  Q
     |||||||||||||||||||| ||||| | ||||||||| | |||||||||||    
T  37259093 gattgctgaaaaagatctttcggttgtagttgtagaaactgaaagagtcataa 37259041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 28313417 - 28313263
Alignment:
Q  6 tcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 105  Q
    |||||||||||||   ||||||| || ||||| || ||||| | ||||||||    || |||||||  | ||||||||||||||||| |||  |||||||    
T  28313417 tcagaactaatacttgcactaatttcactttcaatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataa 28313318  T
Q  106 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    | |||||||| ||||||||||| ||||||||| ||||||||||  ||||||||||    
T  28313317 tcttcattgccgaaaaagatctctcagttgtgactgtagaaactagaagagtcat 28313263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 22270630 - 22270585
Alignment:
Q  193 gtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||    
T  22270630 gtttggctgctgccgttcctgccaatggacaacccaaaaaacactt 22270585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 203859 - 203806
Alignment:
Q  78 atcttgtttctcaacttagatttgataattttcattgctgaaaaagatctttca 131  Q
    |||||||| | ||| ||||  ||||||||||||||||||||||||| |||||||    
T  203859 atcttgttgcacaatttagtcttgataattttcattgctgaaaaagctctttca 203806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 31422009 - 31421814
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  31422009 ttgattcataactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacacatgtaccatcttgtttctcaacttagattt 31421910  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31421909 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 31421814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8363778 - 8363587
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    |||||||||||||||||||  | ||||| |||||||| || ||||||||||| |||| ||||| | || || ||  ||| ||||||| ||||||||| ||    
T  8363778 ttgattcagaactaatacatgcgctaatttccctttcaatataaactgacatactatctgctagatactcaggtctcatattgtttcacaacttagactt 8363679  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagt 192  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||    
T  8363678 gataattttcattgccgaaaaagatctttcagttgtggctgtagaatccggaagtgtcataataagacgcaacaaccaatcaagcaacaagt 8363587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 37126666 - 37126483
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattt 108  Q
    ||||||||| |  ||||||| |||||||| || ||||||| |||||||| ||||| | ||||| |  ||||||||||||||||||| || ||||||||||    
T  37126666 gaactaatagatgcactaatttccctttcaatataaactggcatgctatctgctagatacccagggcccatcttgtttctcaacttggacttgataattt 37126567  T
Q  109 tcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagt 192  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| ||| ||||    
T  37126566 tcattgctgaaaaagatctttcagttgtggctgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaagaagt 37126483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 41596754 - 41596600
Alignment:
Q  6 tcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 105  Q
    |||||||||||||   ||||||| ||||||||||| ||||||| |||| |||    || |||||||  | ||||||||||||||||| |||  |||||||    
T  41596754 tcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataa 41596655  T
Q  106 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    | |||||||||||||||||||| |||||||||||||||||||| ||||| |||||    
T  41596654 tcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagggtcat 41596600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 31421775 - 31421821
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  31421775 tgtttggttgctgccattcctgccaatggacaacccaaaaaacactt 31421821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 18295041 - 18294984
Alignment:
Q  84 tttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctg 141  Q
    ||||| |||||||| |||||||||||||||||||||||| || |||||||||| ||||    
T  18295041 tttcttaacttagacttgataattttcattgctgaaaaaaatatttcagttgttgctg 18294984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 42809665 - 42809474
Alignment:
Q  5 ttcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgata 104  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42809665 ttcagaactaatacattcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgtcccatcttgtttctcaacttagatttgata 42809566  T
Q  105 attttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  42809565 attttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagatgcaacaatctatcaagcaacaagtgttt 42809474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 33363731 - 33363537
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  33363731 ttgattcagaactaatacattcactaatatccttttcgatgtaaactgacatgctatttgctaaaaacc-atgtcccatcttgtttctcaacttagattt 33363633  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33363632 gataattttcattgctaaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 33363537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 337 - 480
Target Start/End: Complemental strand, 27670395 - 27670252
Alignment:
Q  337 taaaaaattagcttgaagcctttgcaagcaatagagaaacataaagacagtgaatcaaaatgaaaagaagagataccatcctaccaagcctttcgcttcc 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27670395 taaaaaattagcttgaagcctttgcaagcaatagagaaacataaagacagggaatcaaaatgaaaagaagagataccatcctaccaagcctttcgcttcc 27670296  T
Q  437 gtttgttagtcgaatttacatatgcatgaaaaattttgaacctg 480  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  27670295 gtttgttagtcgaatttacctatgcatgaaaaagtttgaacctg 27670252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 27670553 - 27670462
Alignment:
Q  247 ttagagcattattcagctaagaataatgggaaaaactgcaaataaagtttggttttataacctcataatattttgcttgtagctaaatccta 338  Q
    |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27670553 ttagagcattattcagctaagaattatgggaaaaattgcaactaaagtttggttttataacctcataatattttgcttgtagctaaatccta 27670462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 32382222 - 32382060
Alignment:
Q  25 taatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaaaga 124  Q
    |||| |||||||  || |||||||||||  ||| |||||  || |||||| |||||||||||||||||||||| || ||||| ||||||| |||||||||    
T  32382222 taatttcccttttaatataaactgacatcttatctgctagtaaaccatgtcccatcttgtttctcaacttagagttaataatcttcattgttgaaaaaga 32382123  T
Q  125 tctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 187  Q
    ||||||| |||| |  |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  32382122 tctttcaattgtagtggtagaaactggaagagtcgtaataagacgcaacaacctatcaagcaa 32382060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 32436177 - 32436015
Alignment:
Q  25 taatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaaaga 124  Q
    |||| |||||||  || |||||||||||  ||| |||||  || |||||| |||||||||||||||||||||| || ||||| ||||||| |||||||||    
T  32436177 taatttcccttttaatataaactgacatcttatctgctagtaaaccatgtcccatcttgtttctcaacttagagttaataatcttcattgttgaaaaaga 32436078  T
Q  125 tctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 187  Q
    ||||||| |||| |  |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  32436077 tctttcaattgtagtggtagaaactggaagagtcgtaataagacgcaacaacctatcaagcaa 32436015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 12868415 - 12868569
Alignment:
Q  6 tcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 105  Q
    |||||||||||||   ||||||| ||||||||||| ||||||| |||| |||    || |||||||  | ||||||||||||||||| |||  |||||||    
T  12868415 tcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataa 12868514  T
Q  106 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    | |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  12868515 tattcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcat 12868569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 18427685 - 18427518
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    |||| ||||||||||| ||  || |||| | |||||| || |||||||||||| |||| |||| ||||||||||   |||||||||        ||| ||    
T  18427685 ttgactcagaactaatgcatacattaatttacctttcaatataaactgacatgttattagctagaaacccatgtcatatcttgttt--------agactt 18427594  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaac 176  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  18427593 gataattttcattgttgaaaaaaatctttcagttgtggctgtagaaactggatgagtcataataaggcgcaacaac 18427518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 42466248 - 42466378
Alignment:
Q  30 tccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaaagatcttt 129  Q
    |||||||| ||||||| |  |||||||| || || |||| ||| ||||||| ||||| ||||| |||| |||| | |||||||||||||  |||||||||    
T  42466248 tccctttcaatgtaaattatcatgctatctggtataaactcatcttccatcatgtttttcaacatagacttgaaagttttcattgctgacgaagatcttt 42466347  T
Q  130 cagttgtggctgtagaaaccggaagagtcat 160  Q
    | ||||||| |||||||||||||||||||||    
T  42466348 cggttgtgggtgtagaaaccggaagagtcat 42466378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 42471607 - 42471694
Alignment:
Q  82 tgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacg 169  Q
    ||||||||||| |||  |||| ||||||||||||||||||||||||||| ||||  || ||| |||||||||||||||| | ||||||    
T  42471607 tgtttctcaacatagtcttgaaaattttcattgctgaaaaagatctttcggttgcagccgtataaaccggaagagtcatgataagacg 42471694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 42809435 - 42809481
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  42809435 tgtttggctgctgccattcctgccaatggacaacccaaaaaacactt 42809481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 33363498 - 33363544
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||    
T  33363498 tgtttgcctgctgccattcctgccaatggacaacccaaaaaacactt 33363544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 42478862 - 42478949
Alignment:
Q  82 tgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacg 169  Q
    |||||| |||| |||  |||| ||||| |||| ||| |||||||||||| ||||| || |||||||||||||||||||| | ||||||    
T  42478862 tgtttcgcaacatagtcttgaaaatttccattcctgcaaaagatctttcggttgtagcagtagaaaccggaagagtcatgataagacg 42478949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 42339 - 42145
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42339 ttgattaaaaactaatacagtcactaatatccctttcgatgtaaactgacatgctatttgctaaaaatccatgttccatcttgtttctcaacttagattt 42240  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42239 gataattttcattgctg-aaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaaccaatcaagcaacaagtgttt 42145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 42106 - 42152
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  42106 tgtttggttgctgccattcctgccaatggacaacccaaaaaacactt 42152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14797392 - 14797586
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14797392 ttgattaaaaactaatacagtcactaatatccctttcgatgtaaactgacatgctatttgctaaaaatccatgttccatcttgtttctcaacttagattt 14797491  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14797492 gataattttcattgctg-aaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaaccaatcaagcaacaagtgttt 14797586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 37466047 - 37466216
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  37466047 ttgattcagaactaatacattcactaatatccctttcgatgtaaactcacatgctatttgctaaaaactcatgtcccatcttgtttctcaacttagattt 37466146  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgc 170  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  37466147 gataattttcattgctgaaaaaaacctttcagttgtggctgtagaaaccggaagaatcataacaagacgc 37466216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 55405064 - 55404881
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattt 108  Q
    ||||||||| |  ||||||| |||||||| || |||||||||||||||| ||||| | ||||| |  ||||||||||||||||||| || ||||||||||    
T  55405064 gaactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggcccatcttgtttctcaacttggacttgataattt 55404965  T
Q  109 tcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagt 192  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| ||| ||||    
T  55404964 tcattgctgaaaaagatctttcagttgtggctgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaagaagt 55404881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 14461605 - 14461521
Alignment:
Q  76 ccatcttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    ||||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  14461605 ccatcttgtttctcaacctagtcttgataatcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcat 14461521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 2664959 - 2665052
Alignment:
Q  76 ccatcttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacg 169  Q
    ||||||||||||||||| ||   |||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||| |||| | ||||||    
T  2664959 ccatcttgtttctcaacctattcttgataatcttcattgttgaaaaagatctctcagttgtggctgtagaaactggaagactcatgataagacg 2665052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 44504733 - 44504660
Alignment:
Q  117 gaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaa 190  Q
    |||||||||||||||||||||| ||||||||  | ||||||| ||| |||||||||||||||||| ||||||||    
T  44504733 gaaaaagatctttcagttgtggttgtagaaattgaaagagtcgtaataagacgcaacaacctatcgagcaacaa 44504660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 16401094 - 16400990
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattt 108  Q
    |||||||||||  ||||||| |||||||| || ||||  ||||| |||   |||| |||| || || |||||||||||||||||||||||||||||||||    
T  16401094 gaactaatacatgcactaatttccctttcaatataaagcgacatactacccgctagaaactcaggtcccatcttgtttctcaacttagatttgataattt 16400995  T
Q  109 tcatt 113  Q
    |||||    
T  16400994 tcatt 16400990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 27599275 - 27599193
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaa 91  Q
    |||||||||||  |||||||||||||||| || |||||||||||||||| | ||| ||||||| ||  |||||||||||||||    
T  27599275 gaactaatacatgcactaatatccctttcaatataaactgacatgctatcttctagaaacccaagtctcatcttgtttctcaa 27599193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 14797625 - 14797579
Alignment:
Q  192 tgtttggctgctgccattcctgccaattgacaacccaaaaaacactt 238  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  14797625 tgtttggttgctgccattcctgccaatggacaacccaaaaaacactt 14797579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 53816272 - 53816354
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaa 91  Q
    |||||||||||  ||||||| | ||||||| | |||| ||||||||||| ||||| ||||||| ||  |||||||||||||||    
T  53816272 gaactaatacatgcactaattttcctttcggtataaattgacatgctatatgctagaaacccaggtctcatcttgtttctcaa 53816354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 17625475 - 17625524
Alignment:
Q  108 ttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagt 157  Q
    |||||||||||||| |||||||| || || ||||||||||||||||||||    
T  17625475 ttcattgctgaaaatgatctttctgtagtagctgtagaaaccggaagagt 17625524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 43335462 - 43335541
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttct 88  Q
    |||||||||||  ||||||| |||||||| || |||||| ||||||||| ||||| ||| ||| || ||||||| |||||    
T  43335462 gaactaatacatgcactaatttccctttcaatataaactaacatgctatatgctagaaatccaggtcccatcttatttct 43335541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 41802831 - 41802778
Alignment:
Q  416 cctaccaagcctttcgcttccgtttgttagtcgaatttacatatgcatgaaaaa 469  Q
    ||||||||||||||| |||||  ||||||||  |||||||||||||| ||||||    
T  41802831 cctaccaagcctttcacttccagttgttagtaaaatttacatatgcaagaaaaa 41802778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 27133048 - 27132885
Alignment:
Q  24 ctaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaaag 123  Q
    ||||| |||||||| || ||||||| ||| |||| ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  27133048 ctaatttccctttcaatataaactggcatactatctgctagaaacccaagtcccatcttgtttctcaacttagacttgataattttcattgccgaaaaag 27132949  T
Q  124 atctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaa 187  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  27132948 atctttcagttgtgtctgtagaaaccagaagagtcataataagacgcaacaacctatcaagcaa 27132885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 51065114 - 51065300
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattt 108  Q
    |||||||||||  ||||||| |||||||| || ||||||||| || ||| ||| | |||| ||  | ||||||| | |||||||||| | || |||||||    
T  51065114 gaactaatacatgcactaatttccctttcaatataaactgacttgttatctgccagaaactcagatcccatcttttctctcaacttatacttaataattt 51065213  T
Q  109 tcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagtgttt 196  Q
    ||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||| ||||||||    
T  51065214 tcattgctgaaaa-gatctttcaattgtggctgtaaaaacaggaagagtcataataagacacaacaacctatcaatcaagaagtgttt 51065300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 25537209 - 25537051
Alignment:
Q  13 taatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcat 112  Q
    |||||||  ||||||| | | |||| || |||| || |||||||||||||| |||| || || ||||||| |||||||||||| ||||||||||||||||    
T  25537209 taatacatgcactaattttcttttcaatataaattgtcatgctatttgctagaaactcaggtcccatcttatttctcaacttaaatttgataattttcat 25537110  T
Q  113 tgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgca 171  Q
    | | ||||||||||||| | ||||| |||| ||||  ||||||||||||| ||| ||||    
T  25537109 taccgaaaaagatcttttaattgtgactgtggaaataggaagagtcataataaggcgca 25537051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 11052607 - 11052745
Alignment:
Q  10 aactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataatttt 109  Q
    ||||||||||  ||||||| | |||||| |  |||| ||||||| ||||||  | |||| || ||  ||||||||||||||||||||| ||||||||| |    
T  11052607 aactaatacatgcactaattttcctttcaacataaattgacatgttatttgtgagaaactcaggtctcatcttgtttctcaacttagacttgataattct 11052706  T
Q  110 cattgctgaaaaagatctttcagttgtggctgtagaaac 148  Q
      ||||||||||||||||||| |||||||| ||||||||    
T  11052707 tgttgctgaaaaagatctttccgttgtggccgtagaaac 11052745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 97292 - 97109
Alignment:
Q  9 gaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattt 108  Q
    ||||||||| |  ||||||| |||||||| || |||||||||||||||| ||||| | ||||| |  ||||||||||||||||||| || ||||||||||    
T  97292 gaactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggcccatcttgtttctcaacttggacttgataattt 97193  T
Q  109 tcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagt 192  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| ||| ||||    
T  97192 tcattgctgaaaaatatctttctgttgtggctgtagaaactggaagagtcataataaggcgcaacaacttatcaatcaagaagt 97109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27156560 - 27156751
Alignment:
Q  1 ttgattcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagattt 100  Q
    |||| ||||||||||||||  || |||| |||||||  ||||||||||||||| ||| ||||| ||||||| || |||||||||||||||||||||  ||    
T  27156560 ttgactcagaactaatacatgcattaatttccctttaaatgtaaactgacatgttatctgctagaaacccaggtcccatcttgtttctcaacttaggctt 27156659  T
Q  101 gataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagt 192  Q
     ||||||||||||||| |||||||||||||| |||| ||| || ||||  |||||||||||| || ||||||||||||||||| ||| ||||    
T  27156660 aataattttcattgctaaaaaagatctttcatttgtagctataaaaacatgaagagtcataataaaacgcaacaacctatcaatcaagaagt 27156751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 10895131 - 10895257
Alignment:
Q  22 cactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaa 121  Q
    ||||||| |||||||| || ||||||||||| |||  ||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  10895131 cactaatttccctttcaatataaactgacatactaactgctaaaaacccaagtcccatcttgtttctcaacttagacttgataattttcattgctgaaaa 10895230  T
Q  122 agatctttcagttgtggctgtagaaac 148  Q
    |||||||||  ||||||||||||||||    
T  10895231 agatctttcgattgtggctgtagaaac 10895257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 15667192 - 15667346
Alignment:
Q  6 tcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 105  Q
    |||||||||||||   ||||||| ||||||||||| ||||| | ||||||||    || |||||||  | ||||||||||||||||| |||  |||||||    
T  15667192 tcagaactaatacttgcactaatttccctttcgatataaaccgtcatgctatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataa 15667291  T
Q  106 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    | |||||||||||||| ||||| |||||||||| ||||||| | |||||||||||    
T  15667292 tcttcattgctgaaaaggatctctcagttgtggatgtagaacctggaagagtcat 15667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 9844878 - 9845050
Alignment:
Q  10 aactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataatttt 109  Q
    ||||||||||  || |||| | |||||| || ||||||||||||||||  |||| ||||| | || || ||||||||||||||||||| |||||||||||    
T  9844878 aactaatacatgcagtaattttcctttcaatataaactgacatgctatcggctagaaacctaagtcccgtcttgtttctcaacttagacttgataatttt 9844977  T
Q  110 cattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatca 182  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| |||||| || ||||||||||||||||    
T  9844978 cattgctgaaaaagatctttcagttgtggcggtagaaactggaagaatcataataaaacgcaacaacctatca 9845050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 5088703 - 5088533
Alignment:
Q  22 cactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaa 121  Q
    ||||||| || ||||| || |||||||||||||||| ||||| | | ||| |  |||| |||||||||||||| || |||||||||||||||||||||||    
T  5088703 cactaatttctctttcaatataaactgacatgctatctgctagatatccagggcccattttgtttctcaacttggacttgataattttcattgctgaaaa 5088604  T
Q  122 agatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctatcaagcaacaagt 192  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||| |||||| ||| ||||    
T  5088603 agatctttcagttgtggctgtagaaactgaaagagtcataataaggcgcaacaacttatcaatcaagaagt 5088533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 43525360 - 43525206
Alignment:
Q  6 tcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataa 105  Q
    |||||||||||||   ||||| | ||||||||||| ||||||| |||| |||    || |||||||  | ||||||||||||||||| |||  |||||||    
T  43525360 tcagaactaatacttgcactagtttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatcttgtttctcaacctagtcttgataa 43525261  T
Q  106 ttttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    | |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  43525260 tcttcattgctgaaaaagatctctcagttgtggctgtagaaactggaagagtcat 43525206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 12055146 - 12055284
Alignment:
Q  22 cactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttctcaacttagatttgataattttcattgctgaaaa 121  Q
    ||||||| |||||||| || ||||| | ||||||||    || |||||||  | |||| |||||||||||| |||  |||||||| ||||||||||||||    
T  12055146 cactaatttccctttcaatataaaccgtcatgctatcatttagaaacccacttcccattttgtttctcaacctagtcttgataatcttcattgctgaaaa 12055245  T
Q  122 agatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    |||||| ||||||||||| |||||| | |||||||||||    
T  12055246 agatctctcagttgtggccgtagaagctggaagagtcat 12055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 41318070 - 41317963
Alignment:
Q  81 ttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctat 180  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||    ||||  ||||||||   ||||||| ||| |||||||||||||||||    
T  41318070 ttgtttctcaacttagatttgataatttccattgttgaaaaaaatctttc----gtggtagtagaaacttaaagagtcgtaataagacgcaacaacctat 41317975  T
Q  181 caagcaacaagt 192  Q
    ||| ||| ||||    
T  41317974 caatcaagaagt 41317963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 1285664 - 1285713
Alignment:
Q  108 ttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagt 157  Q
    |||||||||||||| |||||||| || || ||||||||||||||||||||    
T  1285664 ttcattgctgaaaatgatctttctgtagtagctgtagaaaccggaagagt 1285713  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 34429243 - 34429173
Alignment:
Q  77 catcttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaac 148  Q
    |||||| |||||||||||||  |||||||| ||||| | |||||||||||| |||||||||| | |||||||    
T  34429243 catcttatttctcaacttagtcttgataatcttcat-gttgaaaaagatctatcagttgtggttatagaaac 34429173  T

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Target: scaffold0024 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 12024 - 12126
Alignment:
Q  81 ttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcataacaagacgcaacaacctat 180  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||  | | |||||||   |||| ||||||| |||||||||||||||||    
T  12024 ttgtttctcaacttagacttgataattttcattgctgaaaaagatctttcaattaagacggtagaaattagaagggtcataataagacgcaacaacctat 12123  T
Q  181 caa 183  Q
    |||    
T  12124 caa 12126  T

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Target: scaffold0129 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 7712 - 7794
Alignment:
Q  78 atcttgtttctcaacttagatttgataattttcattgctgaaaaagatctttcagttgtggctgtagaaaccggaagagtcat 160  Q
    ||||||||||||||| |||  || ||||| |||||||||||||||||||| ||||||||| |||||||||  |||||||||||    
T  7712 atcttgtttctcaacctagtcttcataatcttcattgctgaaaaagatctctcagttgtgactgtagaaattggaagagtcat 7794  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 92412 - 92373
Alignment:
Q  76 ccatcttgtttctcaacttagatttgataattttcattgc 115  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  92412 ccatcttgtttctcaacttggacttgataattttcattgc 92373  T

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