View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21572_low_9 (Length: 414)
Name: NF21572_low_9
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 137 - 396
Target Start/End: Complemental strand, 47763257 - 47762998
Alignment:
| Q |
137 |
atcagtttgtgtttttctttctaattggggtcttttatttctgaaatgtggtggttttattgataccattcacacttgcaagtttgggatataatgaaga |
236 |
Q |
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| T |
47763257 |
atcagtttgtgtttttctttctaattggggtcttttatttctgaaatgtggtggttttattgataccattcacacttgcaagtttgggatataatgaaga |
47763158 |
T |
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| Q |
237 |
aaattgtgtgcatatatacgatgcacatttctaactgagaagtttatgattgacatattttacaactttcatcatacttggtaaataaacttttttctat |
336 |
Q |
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| T |
47763157 |
aaattgtgtgcatatatacgatgcacatttctaactgagaagtttatgattgacatattttacaactttcatcatacttgctaaataaacttttttctat |
47763058 |
T |
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| Q |
337 |
ttgtttaaacatgatagtttaaaacatacgaattttatgaggatttaatatgtttctgtg |
396 |
Q |
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| T |
47763057 |
ttgtttaaacatgatagtttaaaacataagaattttatgaggatttaatatgtttctgtg |
47762998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 47763336 - 47763271
Alignment:
| Q |
18 |
ataatgaataataaatgattccattgagagatattgaatgaaaccaggcttgattctcttcttcct |
83 |
Q |
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| T |
47763336 |
ataatgaataatgaatgattccattgagagatattgaatgaaaccaggcttgattctcttcttcct |
47763271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 24765634 - 24765743
Alignment:
| Q |
137 |
atcagtttgtgttttt-ctttctaattggggtctttt-atttctgaaatgtggtggttttattgataccattcacacttgcaagtttgggatataatgaa |
234 |
Q |
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| T |
24765634 |
atcagtttgtgttttttctttctaattggagtttttttatttctgtaatgtggtgattttattgatactattgacgcttgcaagttttggatataat-aa |
24765732 |
T |
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| Q |
235 |
gaaaattgtgt |
245 |
Q |
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| T |
24765733 |
gaaaattgtgt |
24765743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 24765510 - 24765603
Alignment:
| Q |
25 |
ataataaatgattccattgagagatattgaatgaaaccaggcttgattctcttcttccttttgtaagttgtggttacatcttccctcgataagtct |
120 |
Q |
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| T |
24765510 |
ataatgaatgattccattgaga--tattgaatgaaaccaggcatgattctcttcttccttttgttagttgtggttctgttttccctctataagtct |
24765603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 24765821 - 24765869
Alignment:
| Q |
350 |
atagtttaaaacatacgaattttatgaggatttaatatgtttctgtgct |
398 |
Q |
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| T |
24765821 |
atagttcaaaacataagaattttacgaggatttaatttgtttatgtgct |
24765869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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