View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21573_high_2 (Length: 438)

Name: NF21573_high_2
Description: NF21573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21573_high_2
NF21573_high_2
[»] chr4 (3 HSPs)
chr4 (11-435)||(42912054-42912480)
chr4 (22-134)||(6020388-6020497)
chr4 (23-106)||(26070688-26070771)
[»] chr8 (2 HSPs)
chr8 (300-344)||(26129856-26129900)
chr8 (99-147)||(21123064-21123112)
[»] scaffold0527 (2 HSPs)
scaffold0527 (91-122)||(3231-3262)
scaffold0527 (91-122)||(11294-11325)
[»] chr7 (2 HSPs)
chr7 (92-122)||(23773644-23773674)
chr7 (21-73)||(26287346-26287398)
[»] chr1 (1 HSPs)
chr1 (106-146)||(25078649-25078689)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 42912480 - 42912054
Alignment:
Q  11 cacagaagcaatccaaggtccaacagctccctgaaaaacatcagcaatccataaatgcccttttggggcaaacaatctgatcgcagtccagatcaaggga 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42912480 cacagaagcgatccaaggtccaacagctccctgaaaaacatcagcaagccataaatgcccttttggggcaaacaatctgatcgtagtccagatcaaggga 42912381  T
Q  111 tgaacaaacgacggaacacaatccaccaacggcgcataaaacaaccgtgacagatgaaatagttcttaaggtaccataaataactactaccgctaataca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||    
T  42912380 tgaacaaacgacggaacacaatccaccaacggcgcataaaacaatcgtgacagatgaaatagctcttaaggtacgataaatgactactaccgctaacaca 42912281  T
Q  211 acgcgtctacactcctaaccctttcgagcaatggtgaatcgtctcgttgaatccattccaacaaaaacacacacacagatgaacac--aacttttaaaac 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  42912280 acgcgtctacactcctaaccctttcgagcaatggtgaatcgtctcgttgaatccattccaacaaaaacacactcacagatgaacacaaaacttttaaaac 42912181  T
Q  309 caaatcttaaatccagaaaatccagatttaagattatnnnnnnncagagatccggaacaaactaccaccaccaccatcatcttcctggaacaaatcgcga 408  Q
    ||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  42912180 caaatcttaaatccataaaatccagatttaagattataaaaaaacagagatccggaacaaactaccaccaccaccaccaccttcctggaacaaatcgcga 42912081  T
Q  409 gaaaaacgaaacacaaaacagcggcta 435  Q
    |||||||||||||||||||||||||||    
T  42912080 gaaaaacgaaacacaaaacagcggcta 42912054  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 6020497 - 6020388
Alignment:
Q  22 tccaaggtccaacagctccctgaaaaacatcagcaatccataaatgcccttttggggcaaa-caatctgatcgcagtccagatcaagggatgaacaaacg 120  Q
    |||||||||||| |||||||| |||||||||| ||| ||||||| ||||||| ||  |||| ||||| ||  | |||||||||||    |||||||||||    
T  6020497 tccaaggtccaaaagctccctaaaaaacatcaacaaaccataaacgccctttcggaccaaaccaatcagagtgaagtccagatca----atgaacaaacg 6020402  T
Q  121 acggaacacaatcc 134  Q
    ||||| ||||||||    
T  6020401 acggagcacaatcc 6020388  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 26070771 - 26070688
Alignment:
Q  23 ccaaggtccaacagctccctgaaaaacatcagcaatccataaatgcccttttggggcaaa-caatctgatcgcagtccagatcaa 106  Q
    ||||||||||||| |||||| ||||||||| |||| ||| ||  ||||||| ||| |||| ||||||||||| ||||||||||||    
T  26070771 ccaaggtccaacaactccctaaaaaacatcggcaagcca-aagcgccctttcgggccaaatcaatctgatcgaagtccagatcaa 26070688  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 26129900 - 26129856
Alignment:
Q  300 ttttaaaaccaaatcttaaatccagaaaatccagatttaagatta 344  Q
    |||| |||||| |||||||||| ||||||||||||||||||||||    
T  26129900 ttttgaaaccatatcttaaatctagaaaatccagatttaagatta 26129856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 21123112 - 21123064
Alignment:
Q  99 cagatcaagggatgaacaaacgacggaacacaatccaccaacggcgcat 147  Q
    |||||| || |||||||||||||||||||||| |||||| |||| ||||    
T  21123112 cagatcgagtgatgaacaaacgacggaacacagtccaccgacggtgcat 21123064  T

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Target: scaffold0527 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 3231 - 3262
Alignment:
Q  91 tcgcagtccagatcaagggatgaacaaacgac 122  Q
    ||||||||||||||||||||||||||||||||    
T  3231 tcgcagtccagatcaagggatgaacaaacgac 3262  T

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Target: scaffold0527; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 11294 - 11325
Alignment:
Q  91 tcgcagtccagatcaagggatgaacaaacgac 122  Q
    ||||||||||||||||||||||||||||||||    
T  11294 tcgcagtccagatcaagggatgaacaaacgac 11325  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 23773674 - 23773644
Alignment:
Q  92 cgcagtccagatcaagggatgaacaaacgac 122  Q
    |||||||||||||||||||||||||||||||    
T  23773674 cgcagtccagatcaagggatgaacaaacgac 23773644  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 26287346 - 26287398
Alignment:
Q  21 atccaaggtccaacagctccctgaaaaacatcagcaatccataaatgcccttt 73  Q
    ||||||||||||||| ||  || |||||||||||||| ||||||| |||||||    
T  26287346 atccaaggtccaacaactatctaaaaaacatcagcaagccataaacgcccttt 26287398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 25078649 - 25078689
Alignment:
Q  106 agggatgaacaaacgacggaacacaatccaccaacggcgca 146  Q
    ||||||||||||||||||||||||| |||||| ||| ||||    
T  25078649 agggatgaacaaacgacggaacacagtccaccgacgacgca 25078689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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