View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21573_high_4 (Length: 326)
Name: NF21573_high_4
Description: NF21573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21573_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 5973491 - 5973181
Alignment:
| Q |
1 |
aagaaaacagcagtatcaacaccagacatagcaataacatcttgttcagaagaagaaaaagcttccttaatccaagagaaaggattacgtgtcttagaac |
100 |
Q |
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| T |
5973491 |
aagaaaacagcagtatcaagaccagacatagcaataacatcttgttcagaagaagaaaaagcttccttaatccaagagaaaggattacgtgtcttagaac |
5973392 |
T |
|
| Q |
101 |
caccttcaaatggatctaaacccttcaagatcctattaggatagtacaccacattgttcccaggtttactttgtaacaaagcaaacaaaatcatcaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5973391 |
caccttcaaatggatctaaacccttcaagatcctattaggatagtacaccacattgttcccaggtttactttgtaacaaagcaaacaaaatcatcaaaac |
5973292 |
T |
|
| Q |
201 |
taaaaatatcacaaatgaagtaccaagagaggtacaaaacgaagaaaaatccatctgggtttttctctattcaatcaaaacaagtaaagattgaaacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5973291 |
taaaaatatcacaaatgaagtaccaagagaggtacaaaacgaagaaaaatccatctgggtttttctctattcaatcaaaacaagtaaagattgaaacttt |
5973192 |
T |
|
| Q |
301 |
tcagtgcttag |
311 |
Q |
| |
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||||||||||| |
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| T |
5973191 |
tcagtgcttag |
5973181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 1933342 - 1933391
Alignment:
| Q |
32 |
caataacatcttgttcagaagaagaaaaagcttccttaatccaagagaaa |
81 |
Q |
| |
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|||||| |||||||| |||||||||||| |||||| ||||| |||||||| |
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| T |
1933342 |
caataaaatcttgtttagaagaagaaaaggcttccataatcaaagagaaa |
1933391 |
T |
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