View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21573_high_5 (Length: 272)
Name: NF21573_high_5
Description: NF21573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21573_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 40556276 - 40556513
Alignment:
| Q |
17 |
atcagtttatcaccacaaacaaaatacaaaactgatcgaggagaataaggaagaaaagtcactggagcttcaacatcgaaaatggaggaaagtgtttttg |
116 |
Q |
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| T |
40556276 |
atcagtttatcaccacaaacaaaatacaaaactgatcgaggagaataaggaagaaaagtcactggagcttcaacatcgaaaatggaggaaagtgtttttg |
40556375 |
T |
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| Q |
117 |
tttctagaatattgaatgaatatggtggtgatgattatcggatgatggaaaatttattatgtttgcgatctaagttcttagctaatcaattcaaagatga |
216 |
Q |
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| T |
40556376 |
tttctagaatattgaatgaatatggtggtgatgattatcggatgatggaaaatttactaagtttgcgatctaagttcttagctaatcaattcaaaaatga |
40556475 |
T |
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| Q |
217 |
tgtttctcatattcttcggtcaaataaccaggagtact |
254 |
Q |
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| T |
40556476 |
tgtttcttatattcttcggtcaaataaccgggagtact |
40556513 |
T |
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