View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21573_low_1 (Length: 560)

Name: NF21573_low_1
Description: NF21573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21573_low_1
NF21573_low_1
[»] chr3 (3 HSPs)
chr3 (1-543)||(27491329-27491871)
chr3 (72-109)||(34610603-34610640)
chr3 (133-181)||(11659750-11659798)
[»] chr1 (3 HSPs)
chr1 (132-178)||(34264553-34264599)
chr1 (132-186)||(17468307-17468361)
chr1 (66-106)||(26059980-26060020)
[»] chr7 (4 HSPs)
chr7 (68-113)||(25886807-25886852)
chr7 (72-107)||(4507209-4507244)
chr7 (132-181)||(24043021-24043070)
chr7 (72-105)||(40746038-40746071)
[»] chr6 (2 HSPs)
chr6 (132-181)||(30656464-30656513)
chr6 (72-105)||(2736172-2736205)
[»] chr2 (5 HSPs)
chr2 (132-181)||(11099670-11099719)
chr2 (72-109)||(14127178-14127215)
chr2 (68-112)||(1926442-1926486)
chr2 (132-181)||(19163559-19163606)
chr2 (68-108)||(37769944-37769984)
[»] scaffold0542 (1 HSPs)
scaffold0542 (134-175)||(5870-5911)
[»] chr4 (2 HSPs)
chr4 (133-178)||(46660977-46661022)
chr4 (72-108)||(40726764-40726800)
[»] scaffold0045 (1 HSPs)
scaffold0045 (66-98)||(40969-41001)
[»] chr8 (2 HSPs)
chr8 (72-108)||(7267470-7267506)
chr8 (68-108)||(16962247-16962287)
[»] chr5 (2 HSPs)
chr5 (72-108)||(13296935-13296971)
chr5 (68-108)||(24346738-24346778)


Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 27491329 - 27491871
Alignment:
Q  1 ttggacaaactgtactatgtatcatatctaattaacaatagatttaataaaatctttttgtttgtttttaaaaattgtggttgggtctaacacaatccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27491329 ttggacaaactgtactatgtatcatatctaattaacaatagatttaataaaatctttttgtttgtttttaaaaattgtggttgagtctaacacaatccta 27491428  T
Q  101 caaaaccgatttaaaagatgaggagctcatccttataaatatattgtcagatcatctctcatctgatgtgagactctttaatattagtatatcgaacatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27491429 caaaaccgatttaaaagatgaggagctcatccttataaatatattgtcaggtcatctctcatctgatgtgagactctttaatattaatatatcgaacatt 27491528  T
Q  201 agtagaaggaatcttcatctataatgtttgaaagtcattttttaatggggaattattgcatggaaaatatttggaaagatgtatgtcaagattattttca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27491529 agtagaaggaatcttcatctataatgtttgaaagtcattttttaatggggaattattgcatggaaaatatttggaaagatgtatgtcaagatcattttca 27491628  T
Q  301 aaaagagcatgatacaattgtatcatgtgtcagcaattgggatatggtatcaactattatctgaggatctctattcttcatgatctcttcaataagttta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27491629 aaaagagcatgatacaattgtatcatgtgtcagcaattgggatatggtatcaactattatctgaggatctctattcttcatgatctcttcaataagttta 27491728  T
Q  401 atacttgttgattttcaaagagatttcctactgaataatgatacaaatgtgtgtaacacatgtgaagatacacattgtggatatgtttctgaggctttgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27491729 atacttgttgattttcaaagagatttcctactgaataatgatacaaatgtgtgtaacacatgtgaagatacacattgtggatatgtttctgaggctttgt 27491828  T
Q  501 gggatgtttcgttaggtcacgtgtaataccaatgccagaaatt 543  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27491829 gggatgtttcgttaggtcacgtgtaataccaatgccagaaatt 27491871  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 34610640 - 34610603
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaaccga 109  Q
    |||||||||||||||||||||||| || ||||||||||    
T  34610640 aaattgtggttgggtctaacacaaccccacaaaaccga 34610603  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 11659750 - 11659798
Alignment:
Q  133 ttataaatatattgtcagatcatctctcatctgatgtgagactctttaa 181  Q
    ||||||| | ||||||||||||||||| ||  |||||||||||||||||    
T  11659750 ttataaacacattgtcagatcatctcttattcgatgtgagactctttaa 11659798  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 34264553 - 34264599
Alignment:
Q  132 cttataaatatattgtcagatcatctctcatctgatgtgagactctt 178  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  34264553 cttataaatacattgtcagatcatctcttatctgatgtgagattctt 34264599  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 17468361 - 17468307
Alignment:
Q  132 cttataaatatattgtcagatcatctctcatctgatgtgagactctttaatatta 186  Q
    |||||||| ||||||||||| ||||||| ||| |||||| |||||||||| ||||    
T  17468361 cttataaacatattgtcagaccatctcttatccgatgtgggactctttaacatta 17468307  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 26059980 - 26060020
Alignment:
Q  66 ttttaaaaattgtggttgggtctaacacaatcctacaaaac 106  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  26059980 ttttaaaaattatagttgggcctaacacaatcctacaaaac 26060020  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 25886807 - 25886852
Alignment:
Q  68 ttaaaaattgtggttgggtctaacacaatcctacaaaaccgattta 113  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||    
T  25886807 ttaaaaatagtggttgggtctaacacaaccctacaaaatcgattta 25886852  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 4507244 - 4507209
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaacc 107  Q
    |||||||||| |||||||||||||||||||||||||    
T  4507244 aaattgtggtcgggtctaacacaatcctacaaaacc 4507209  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 24043021 - 24043070
Alignment:
Q  132 cttataaatatattgtcagatcatctctcatctgatgtgagactctttaa 181  Q
    |||||||||| |||||||| |||| ||| |||||| ||||||||||||||    
T  24043021 cttataaatacattgtcaggtcatttcttatctgacgtgagactctttaa 24043070  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 40746038 - 40746071
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaa 105  Q
    ||||||||||||||||||||||||||| ||||||    
T  40746038 aaattgtggttgggtctaacacaatcccacaaaa 40746071  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 30656464 - 30656513
Alignment:
Q  132 cttataaatatattgtcagatcatctctcatctgatgtgagactctttaa 181  Q
    ||||||||| |||||||||| ||||||| ||| |||||||||||||||||    
T  30656464 cttataaatttattgtcagaccatctcttatcagatgtgagactctttaa 30656513  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 2736172 - 2736205
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaa 105  Q
    |||| |||||||||||||||||||||||||||||    
T  2736172 aaatcgtggttgggtctaacacaatcctacaaaa 2736205  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 11099670 - 11099719
Alignment:
Q  132 cttataaatatattgtcagatcatctctcatctgatgtgagactctttaa 181  Q
    |||||||| | |||||||| |||||||| |||||||||||||||||||||    
T  11099670 cttataaacacattgtcaggtcatctcttatctgatgtgagactctttaa 11099719  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 14127178 - 14127215
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaaccga 109  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14127178 aaattgtggttggctctaacacaatcctacaaaaccga 14127215  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 1926442 - 1926486
Alignment:
Q  68 ttaaaaattgtggttgggtctaacacaatcctacaaaaccgattt 112  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||    
T  1926442 ttaaaaatcgtggttgagcctaacacaatcctacaaaaccgattt 1926486  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 19163606 - 19163559
Alignment:
Q  132 cttataaatatattgtcagatcatctctcatctgatgtgagactctttaa 181  Q
    |||||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  19163606 cttataaatatattgttagatca--tcttatctgatgtgagactctttaa 19163559  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 37769944 - 37769984
Alignment:
Q  68 ttaaaaattgtggttgggtctaacacaatcctacaaaaccg 108  Q
    |||||||| ||||||||||||||||||| || |||||||||    
T  37769944 ttaaaaatcgtggttgggtctaacacaaccccacaaaaccg 37769984  T

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Target: scaffold0542 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 5911 - 5870
Alignment:
Q  134 tataaatatattgtcagatcatctctcatctgatgtgagact 175  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  5911 tataaatatattgtcagatcatcttctatctgatgtgagact 5870  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 46660977 - 46661022
Alignment:
Q  133 ttataaatatattgtcagatcatctctcatctgatgtgagactctt 178  Q
    |||||||||||||||||||||||  || ||| ||||||||||||||    
T  46660977 ttataaatatattgtcagatcattacttatccgatgtgagactctt 46661022  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 40726800 - 40726764
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaaccg 108  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  40726800 aaatcgtggttgggcctaacacaatcctacaaaaccg 40726764  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 40969 - 41001
Alignment:
Q  66 ttttaaaaattgtggttgggtctaacacaatcc 98  Q
    |||||||||| ||||||||||||||||||||||    
T  40969 ttttaaaaatcgtggttgggtctaacacaatcc 41001  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 7267470 - 7267506
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaaccg 108  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  7267470 aaatggtggttgggtctaacacaaccctacaaaaccg 7267506  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 16962247 - 16962287
Alignment:
Q  68 ttaaaaattgtggttgggtctaacacaatcctacaaaaccg 108  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  16962247 ttaaaaattgtggttggacctaacacaatcccacaaaaccg 16962287  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 13296971 - 13296935
Alignment:
Q  72 aaattgtggttgggtctaacacaatcctacaaaaccg 108  Q
    |||| |||||||||||||||||||||| |||||||||    
T  13296971 aaatcgtggttgggtctaacacaatcccacaaaaccg 13296935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 24346738 - 24346778
Alignment:
Q  68 ttaaaaattgtggttgggtctaacacaatcctacaaaaccg 108  Q
    |||||||| ||||||||||||||||||| || |||||||||    
T  24346738 ttaaaaatcgtggttgggtctaacacaaccccacaaaaccg 24346778  T

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