View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21573_low_12 (Length: 220)
Name: NF21573_low_12
Description: NF21573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21573_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 11636027 - 11635976
Alignment:
| Q |
14 |
aatataggaaaacatgcaatcctcaagaacaaaattgataacaattaaaccc |
65 |
Q |
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| T |
11636027 |
aatataggaaaacatgcaatcctcaagaacaaaattgataacaattaaaccc |
11635976 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 11635890 - 11635855
Alignment:
| Q |
66 |
ccattgccttaaacaaatttgctctaaattaatatc |
101 |
Q |
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| T |
11635890 |
ccattgccttaaacaaatttgctctaaattaatatc |
11635855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 11635859 - 11635826
Alignment:
| Q |
170 |
atatcgacgataataataacctaacttttaatct |
203 |
Q |
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| T |
11635859 |
atatcaacgataataataacctaacttttaatct |
11635826 |
T |
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