View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21573_low_8 (Length: 267)
Name: NF21573_low_8
Description: NF21573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21573_low_8 |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 36 - 246
Target Start/End: Complemental strand, 9868336 - 9868133
Alignment:
| Q |
36 |
aacaacaaaaacaggctacggaaatctaaagttaggcggccgatatctgtctctagcatactcaactgacagtgaaggagacaatattccaaaccaaata |
135 |
Q |
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| T |
9868336 |
aacaacaaaatcaggctacggaaatctaaagttaggcagccgatgtctgtctctagcatagtcaactgacagtgaagcagacaatattccaaaccaa--g |
9868239 |
T |
|
| Q |
136 |
taggaatggactcataaactaccatatgggctcataaaacccattgaaggattatgtaaacaatacatgtcacgaagaagaacgatgctagaatactttg |
235 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
9868238 |
taggaatggactcataaactacc--atgggctcataaaaaccaatgaaagattatgtaaatgatacatgtcac---gaagaacgatgctagaatactttg |
9868144 |
T |
|
| Q |
236 |
aacatggaacc |
246 |
Q |
| |
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||||||||||| |
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| T |
9868143 |
aacatggaacc |
9868133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 9846450 - 9846420
Alignment:
| Q |
216 |
aacgatgctagaatactttgaacatggaacc |
246 |
Q |
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| T |
9846450 |
aacgatgctagaatactttgaacatggaacc |
9846420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 16227098 - 16227041
Alignment:
| Q |
49 |
ggctacggaaatctaaagttaggcggccgatatctgtctctagcatactcaactgaca |
106 |
Q |
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| T |
16227098 |
ggctacggaaatctaaagttaggcagcccatgtatgtctcttgcaaaatcaactgaca |
16227041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 17072477 - 17072647
Alignment:
| Q |
40 |
acaaaaacaggctacggaaatctaaagttaggcggccgatatctgtctctagcatactcaactgacagtgaaggagacaatattccaaaccaaatatagg |
139 |
Q |
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||||||||| |||||||||||||||||||||| ||| || ||||||||||||| | |||||||||||||||| || ||||||||||| | || |||| |
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| T |
17072477 |
acaaaaacaagctacggaaatctaaagttaggaagcctatgtctgtctctagcaaaatcaactgacagtgaagcagggaatattccaaaaccaa-gtagg |
17072575 |
T |
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| Q |
140 |
aatggactcataaactaccatatgggctcataaaacccattgaaggattatgtaaacaatacatgtcacgaaga |
213 |
Q |
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| T |
17072576 |
aatggactcataaactacc--atgggctcataaaaaccaatgaaggattatgtaaacgatacatgtcacgaaga |
17072647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 14553337 - 14553391
Alignment:
| Q |
52 |
tacggaaatctaaagttaggcggccgatatctgtctctagcatactcaactgaca |
106 |
Q |
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| T |
14553337 |
tacggaaatctaaagttaggcagcccatgtctgtctcttgcaaaatcaactgaca |
14553391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 11745853 - 11746023
Alignment:
| Q |
40 |
acaaaaacaggctacggaaatctaaagttaggcggccgatatctgtctctagcatactcaactgacagtgaaggagacaatattccaaaccaaatatagg |
139 |
Q |
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||||||||||| ||| ||||||||||||||| | ||| || ||||||||| || | |||||||||||||||| ||||||||||||||| | || |||| |
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| T |
11745853 |
acaaaaacaggatacagaaatctaaagttagacagcccatgcctgtctctaacaaaatcaactgacagtgaagcagacaatattccaaaaccaa-gtagg |
11745951 |
T |
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| Q |
140 |
aatggactcataaactaccatatgggctcataaaacccattgaaggattatgtaaacaatacatgtcacgaaga |
213 |
Q |
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|||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||| |||| |
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| T |
11745952 |
aatggactcataaactaccata--ggctcataaaaaccaatgaaggattatgtaaacgatacatgtcacaaaga |
11746023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 29554 - 29682
Alignment:
| Q |
82 |
ctgtctctagcatactcaactgacagtgaaggagacaatattcca-aaccaaatataggaatggactcataaactaccatatgggctcataaaacccatt |
180 |
Q |
| |
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|||||||| ||| | |||||||| ||||||| || |||||||||| |||||| || ||| |||||||||||||||||| |||||||||||| ||| | |
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| T |
29554 |
ctgtctctggcaaaatcaactgatagtgaagcaggcaatattccataaccaagta--ggagtggactcataaactaccac--gggctcataaaaaccaat |
29649 |
T |
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| Q |
181 |
gaaggattatgtaaacaatacatgtcacgaaga |
213 |
Q |
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|||| ||||||||||| |||||||||||||||| |
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| T |
29650 |
gaagaattatgtaaacgatacatgtcacgaaga |
29682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 5785181 - 5785309
Alignment:
| Q |
82 |
ctgtctctagcatactcaactgacagtgaaggagacaatattcca-aaccaaatataggaatggactcataaactaccatatgggctcataaaacccatt |
180 |
Q |
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|||||||| ||| | |||||||| ||||||| || |||||||||| |||||| || ||| |||||||||||||||||| |||||||||||| ||| | |
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| T |
5785181 |
ctgtctctggcaaaatcaactgatagtgaagcaggcaatattccataaccaagta--ggagtggactcataaactaccac--gggctcataaaaaccaat |
5785276 |
T |
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| Q |
181 |
gaaggattatgtaaacaatacatgtcacgaaga |
213 |
Q |
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|||| ||||||||||| |||||||||||||||| |
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| T |
5785277 |
gaagaattatgtaaacgatacatgtcacgaaga |
5785309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 19009580 - 19009519
Alignment:
| Q |
51 |
ctacggaaatctaaagttaggcggccgatatctgtctctagcatactcaactgacagtgaag |
112 |
Q |
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||||||||||||||||||||| ||| || ||||||||||||| | |||||||||| ||||| |
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| T |
19009580 |
ctacggaaatctaaagttaggtagcccatgtctgtctctagcaaaatcaactgacaatgaag |
19009519 |
T |
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