View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21573_low_9 (Length: 267)
Name: NF21573_low_9
Description: NF21573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21573_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 14589539 - 14589301
Alignment:
| Q |
18 |
tatatgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14589539 |
tatatgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaa |
14589440 |
T |
|
| Q |
118 |
cctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggcccc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14589439 |
cctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggcccc |
14589340 |
T |
|
| Q |
218 |
atctggctcactccttggtacctcaacagccactttctt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14589339 |
atctggctcactccttggtacctcaacagccactttctt |
14589301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 14623197 - 14622959
Alignment:
| Q |
18 |
tatatgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaa |
117 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14623197 |
tatatgaaatatgtttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaa |
14623098 |
T |
|
| Q |
118 |
cctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggcccc |
217 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14623097 |
cctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggcccc |
14622998 |
T |
|
| Q |
218 |
atctggctcactccttggtacctcaacagccactttctt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14622997 |
atctggctcactccttggtacctcaacagccactttctt |
14622959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 256
Target Start/End: Complemental strand, 12847080 - 12846856
Alignment:
| Q |
32 |
ttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatttct |
131 |
Q |
| |
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|||||| || |||||||| ||| |||||||||||| |||||||| | || |||||||| |||||||| ||||||||||| | || ||| ||||| ||| |
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| T |
12847080 |
ttaattctcagaatgaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctct |
12846981 |
T |
|
| Q |
132 |
ttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactcc |
231 |
Q |
| |
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|| || ||||||||||||||| ||||||| |||||| |||| | |||||||||||| || ||| | |||||| ||| || |||||| |||||| | |
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| T |
12846980 |
tttgcattgttcctgtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttc |
12846881 |
T |
|
| Q |
232 |
ttggtacctcaacagccactttctt |
256 |
Q |
| |
|
|||| ||||||| ||||||||||| |
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|
| T |
12846880 |
ttggaacctcaatggccactttctt |
12846856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 51369340 - 51369575
Alignment:
| Q |
21 |
atgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacct |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| || || || | ||||||||||| ||||||||||||||||||||| | || | |
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| T |
51369340 |
atgaaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaattt |
51369439 |
T |
|
| Q |
121 |
ttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggccccatc |
220 |
Q |
| |
|
||||||| ||||| || || |||||| | | || ||||||||||||||||||||||||||||||||||| || ||| | |||||| ||| || |||||| |
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|
| T |
51369440 |
ttcccatatctttagcatttttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatc |
51369539 |
T |
|
| Q |
221 |
tggctcactccttggtacctcaacagccactttctt |
256 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||| |
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| T |
51369540 |
ttgctcactccttggtacttcaacagccactttctt |
51369575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 29955111 - 29954878
Alignment:
| Q |
23 |
gaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaaccttt |
122 |
Q |
| |
|
|||||||||||||||| | || |||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
29955111 |
gaaatatgcttaattgacataacgaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttt |
29955012 |
T |
|
| Q |
123 |
cccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctg |
222 |
Q |
| |
|
|||| |||||||| || |||| || |||||||||||||||||||||||| ||||||||||||||| || | | |||||| ||| || ||||||| |
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| T |
29955011 |
tccatatctttggcattattccgatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatctt |
29954912 |
T |
|
| Q |
223 |
gctcactccttggtacctcaacagccactttctt |
256 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |
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| T |
29954911 |
gctcactccttggtacctcaattgccaccttctt |
29954878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 41 - 256
Target Start/End: Complemental strand, 11532406 - 11532191
Alignment:
| Q |
41 |
ggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttg |
140 |
Q |
| |
|
||||||||||||| |||||||||||| |||| || | || |||||||| ||||||||||||||||||||| | |||||||||||| |||||||| ||| |
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|
| T |
11532406 |
ggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggcattg |
11532307 |
T |
|
| Q |
141 |
ttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggtacct |
240 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||||||||||||||||||| || || | |||||| ||| || ||| ||| ||||||||||||||||| |
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|
| T |
11532306 |
tttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggtacct |
11532207 |
T |
|
| Q |
241 |
caacagccactttctt |
256 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
11532206 |
caatagccactttctt |
11532191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 20493245 - 20493015
Alignment:
| Q |
24 |
aaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacctttc |
123 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||| | || ||||| |
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|
| T |
20493245 |
aaatatgcttaattgttggaatgaactctatgtttttggagagcatcaatgaaacctttaatgtattcattgtgaagatcttttgaaccgaaaatctttc |
20493146 |
T |
|
| Q |
124 |
ccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctgg |
223 |
Q |
| |
|
|||| |||||||| || || || || |||||||||||||||||||||||| |||||||||||||||| || | | | |||||| ||| || ||||||| | |
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|
| T |
20493145 |
ccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatgttttggctatagagtccctagtaaaggacccatcttg |
20493046 |
T |
|
| Q |
224 |
ctcactccttggtacctcaacagccactttc |
254 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| |
|
|
| T |
20493045 |
ctcattccttggtacctcaatagccaatttc |
20493015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 87 - 252
Target Start/End: Complemental strand, 1355511 - 1355346
Alignment:
| Q |
87 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
186 |
Q |
| |
|
|||| |||||||| |||||||||||| | |||||| |||| ||||| || ||||||||| || ||||||||||||||||||| ||| |||||||||||| |
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|
| T |
1355511 |
tattgattgtgaatatcttttgaactgaaaaccttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
1355412 |
T |
|
| Q |
187 |
ttttagcaacacaatccctattaatggccccatctggctcactccttggtacctcaacagccactt |
252 |
Q |
| |
|
| ||| ||| | |||||| ||| | ||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
1355411 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacttcaacagccactt |
1355346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 1362397 - 1362233
Alignment:
| Q |
87 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcgttgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
186 |
Q |
| |
|
|||| ||| |||| |||||||||||| | ||| || |||| ||||| || ||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
1362397 |
tattgattatgaatatcttttgaactgaaaactttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
1362298 |
T |
|
| Q |
187 |
ttttagcaacacaatccctattaatggccccatctggctcactccttggtacctcaacagccact |
251 |
Q |
| |
|
| ||| ||| | |||||| ||| | ||||||| |||||||||||||||||||||||||||| |
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|
| T |
1362297 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccact |
1362233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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