View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21574_high_11 (Length: 363)
Name: NF21574_high_11
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 10124588 - 10124260
Alignment:
| Q |
19 |
accatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10124588 |
accatcttctccaaaacagaatctttaacatcaccggcgatgttaaatgcaagagttgtcaaacaaagttccagatgtcgtttgatttggtggcgaaatt |
10124489 |
T |
|
| Q |
119 |
cgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgc |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10124488 |
cgatgtaatctcccaatatttagttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgc |
10124389 |
T |
|
| Q |
219 |
aatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttg |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10124388 |
aatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttg |
10124289 |
T |
|
| Q |
319 |
aacaattgaaatatttttgcaagtataat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10124288 |
aacaattgaaatatttttgcaagtataat |
10124260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 28650187 - 28649862
Alignment:
| Q |
21 |
catcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcg |
120 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||| || ||||| ||||||||||||| ||| || ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
28650187 |
catcttctacaaaatgaaatctttaacatcatgggtgacgttcaatgcaagagttgtcaaacgaaattccaaatgtcgtttgattttgtggcgaaattcg |
28650088 |
T |
|
| Q |
121 |
atgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaa |
220 |
Q |
| |
|
||| |||||| ||||||| | | | |||| | || ||||||||||||||||||||| || ||||||| |||| |||||| | |||| || ||||| |
|
|
| T |
28650087 |
atgcaatctctcaatattcgatcataaacatgaataccatgcatgatagggcaccatggattttgatgaatcctagattgccaagaagtgttcaatgcaa |
28649988 |
T |
|
| Q |
221 |
tcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaa |
320 |
Q |
| |
|
|| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||| || ||| || |
|
|
| T |
28649987 |
tcgtgaaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaa |
28649888 |
T |
|
| Q |
321 |
caattgaaatatttttgcaagtataa |
346 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
28649887 |
caattgaagtatttttgcaagtataa |
28649862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 343
Target Start/End: Complemental strand, 25040963 - 25040650
Alignment:
| Q |
30 |
caaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatct |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||| ||||| ||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
25040963 |
caaaacagaatctttaacatcaccggcgatgttcaatgcaatagttgcaaaacaaagttccaaatgtcttttgatttgttggtgaaattcaatgaaatct |
25040864 |
T |
|
| Q |
130 |
cccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaa |
229 |
Q |
| |
|
| |||||||||||||||||| | |||||||||||||||||||||||| | | ||||||| |||||| |||| || ||| ||||||||||||||||||| |
|
|
| T |
25040863 |
ctcaatatttggttacaaacatgaacaccatgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaa |
25040764 |
T |
|
| Q |
230 |
ctgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaa |
329 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
25040763 |
tagtgttaaaccggtgattgctgagaagaaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaag |
25040664 |
T |
|
| Q |
330 |
tatttttgcaagta |
343 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25040663 |
tatttttgcaagta |
25040650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 25044710 - 25044385
Alignment:
| Q |
21 |
catcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcg |
120 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || || ||||| ||||||||||| | |||||| || || ||||| || ||||||||||| ||||| | |
|
|
| T |
25044710 |
catcttctacaaaatggaatctttaacatcaccggtgaggttcaatgcaagagttgccaaacaaaatttcaaatgtccttcgatttggtggcaaaatttg |
25044611 |
T |
|
| Q |
121 |
atgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaa |
220 |
Q |
| |
|
|||||||| | || |||||||| |||||| | || |||||||||||||||||||| | | ||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
25044610 |
atgtaatcgctcagtatttggtcacaaacatgaataccatgcatgatagggcaccgggaattttgatgaatccaagattgccaagatgtgtgcattgcaa |
25044511 |
T |
|
| Q |
221 |
tcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaa |
320 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||| || | ||||||||||| |||||||| || ||| || |
|
|
| T |
25044510 |
caaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaa |
25044411 |
T |
|
| Q |
321 |
caattgaaatatttttgcaagtataa |
346 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
25044410 |
caattgaagtatttttgcaagtataa |
25044385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 25043119 - 25042801
Alignment:
| Q |
21 |
catcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcg |
120 |
Q |
| |
|
||||||||| ||||| |||||||||| |||| ||| ||||| |||||||||| | || ||||||| | ||| |||| ||||||||| ||||||| | |
|
|
| T |
25043119 |
catcttctctaaaacggaatctttaatgtcactatcgacgttcaacgcaagagttgccaaataaagttctaaatgacgttcgatttggtgacgaaatttg |
25043020 |
T |
|
| Q |
121 |
atgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaa |
220 |
Q |
| |
|
| ||||||| ||||||||||| |||||| | |||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
25043019 |
acgtaatctatcaatatttggtcacaaacatgaacaccatacatgatagggcaccaacgcttttgatgtatccaagattgctgaagtgtgtgcatt--ta |
25042922 |
T |
|
| Q |
221 |
tcaagaaaactgtgtgaagccggtaattgctgagaagaaaaag--aatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttg |
318 |
Q |
| |
|
|| ||| | ||||||| | |||| |||| ||||||||||| |||||||| | | || |||||||| | |||||||||||||| || || ||||||| |
|
|
| T |
25042921 |
tcgagata---gtgtgaaactggtacttgccaagaagaaaaagataatatcaactagatgcttctgttgttgggacaaatgcttggctgctgcaagcttg |
25042825 |
T |
|
| Q |
319 |
aacaattgaaatatttttgcaagt |
342 |
Q |
| |
|
||| | |||||||| ||| ||||| |
|
|
| T |
25042824 |
aaccactgaaatatattttcaagt |
25042801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 54479360 - 54479457
Alignment:
| Q |
207 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttgg |
304 |
Q |
| |
|
|||||||| || |||||| ||||| |||||||||||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
54479360 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg |
54479457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 21392879 - 21393192
Alignment:
| Q |
30 |
caaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatct |
129 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||| ||||||||||| | ||||||||| || ||| |||| ||| || |||||||||||||||||| |
|
|
| T |
21392879 |
caaaacaaaatctttagcatcaccggcgatgttcaatgcaagagttgccaaacaaagtttcaaatgccgttcgatctgcgtacgaaattcgatgtaatct |
21392978 |
T |
|
| Q |
130 |
cccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaa |
229 |
Q |
| |
|
| |||||||||||||| ||| | |||||||||||||||||||||||| ||| |||||| |||||||| || | |||| ||||||||||||||||| |
|
|
| T |
21392979 |
ctcaatatttggttacgaacatgaacaccatgcatgatagggcaccaaagatcttgatgaatccaagactgccaagatgtgcacattgcaatcaagaaaa |
21393078 |
T |
|
| Q |
230 |
ctgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaa |
329 |
Q |
| |
|
| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
21393079 |
cagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttgaacaattgaag |
21393178 |
T |
|
| Q |
330 |
tatttttgcaagta |
343 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21393179 |
tatttttgcaagta |
21393192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 60 - 346
Target Start/End: Original strand, 21422219 - 21422509
Alignment:
| Q |
60 |
gttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaacttcaacacca |
159 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| |||||||| |||||| || ||||| ||||||||||| | |||||||||||||||| | |||| || |
|
|
| T |
21422219 |
gttcaatgcaagagttgccgaacaaagttccaaatgtcgttcgatttgcaagcaaaatttgatgtaatctctcgatatttggttacaaacatgaacaaca |
21422318 |
T |
|
| Q |
160 |
tgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaa |
259 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| |||| || |||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
21422319 |
tgcatgatagggcaccagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgctgagaagaa |
21422418 |
T |
|
| Q |
260 |
aaagaatatcaattggttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa |
346 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
21422419 |
aaagaatatctattggttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataa |
21422509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
| Q |
207 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
306 |
Q |
| |
|
||||| |||||||||||| |||| ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
1975279 |
tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt |
1975180 |
T |
|
| Q |
307 |
gttg |
310 |
Q |
| |
|
|||| |
|
|
| T |
1975179 |
gttg |
1975176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 60 - 346
Target Start/End: Complemental strand, 24690862 - 24690576
Alignment:
| Q |
60 |
gttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaacttcaacacca |
159 |
Q |
| |
|
||||| ||||||||||| | |||||||||| | || || ||||||||| ||| |||| ||| ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
24690862 |
gttcaatgcaagagttgacaaacaaagttctaaatatcttttgatttgttggaaaaatgcgacgtaatttcccaatagttggttacaaacttgaacacca |
24690763 |
T |
|
| Q |
160 |
tgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaa |
259 |
Q |
| |
|
|||||||||||||| | ||| ||||||| ||||||||||| || ||||| |||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
24690762 |
tgcatgatagggcaagaaagattttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattattgagaagaa |
24690663 |
T |
|
| Q |
260 |
aaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa |
346 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||| |||||||||| |||| |||| |||| | ||||||||||||||||| |
|
|
| T |
24690662 |
aaagaatatcaattgattgtttctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataa |
24690576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
| Q |
267 |
atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa |
340 |
Q |
| |
|
||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
39600540 |
atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa |
39600467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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