View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_high_17 (Length: 301)
Name: NF21574_high_17
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 2006599 - 2006317
Alignment:
| Q |
4 |
aggaaggaatggaacagtgggatcatgtactgttagagagactttaactcggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaa |
103 |
Q |
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| T |
2006599 |
aggaaggaatggaacagtgggatcatgtactgttagagatgctttaactcggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaa |
2006500 |
T |
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| Q |
104 |
tcatctccttggccaaggaatcttaagattgattcccaacattcttgaggaaaatctttcactaacatatttgatatagtaaatattgatctaaaggtgt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2006499 |
tcatctccttggccaaggaatcttaagattgattcccaacattcttgaggaaaatctttcactaatatatttgatatagtaaatattgatctaaaggtgt |
2006400 |
T |
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| Q |
204 |
aggagcaggcttggcacctaaaagacctgaggaatcaagcaagtccaagcagtattttctttgggaaatagagattccttctt |
286 |
Q |
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| T |
2006399 |
aggagcaggcttggcacctaaaagacctgaggaatcaagcaagtccaagcagtattttctttgggaaatagagattccttctt |
2006317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 1743786 - 1743975
Alignment:
| Q |
7 |
aaggaatggaacagtgggatcatgtactgttagagagactttaactcggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatca |
106 |
Q |
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| T |
1743786 |
aaggaatagaatagtggaatcatgtattgttaaagaaaatttcacttggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatct |
1743885 |
T |
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| Q |
107 |
tctccttggccaaggaatcttaagattgattcccaacattcttgaggaaaatctttcactaacatatttgatatagtaaatattgatcta |
196 |
Q |
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| T |
1743886 |
tttccttggccaaggaatttgaagattgattcccaacattcttgaggaaaatctttcaataacatatttgatataataaatgttgatcta |
1743975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 1498300 - 1498231
Alignment:
| Q |
55 |
gtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatcatctccttggccaaggaat |
124 |
Q |
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|||| ||||| || ||||||||||||| |||||| ||||||||| ||||| | || ||||||||||||| |
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| T |
1498300 |
gtttttaatgtaatggaatttcttgcaaaccataaaaacagacttcaaattacttctttggccaaggaat |
1498231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 25419804 - 25419897
Alignment:
| Q |
193 |
tctaaaggtgtaggagcaggcttggcacctaaaagacctgaggaatcaagcaagtccaagcagtattttctttgggaaatagagattccttctt |
286 |
Q |
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| T |
25419804 |
tctaaaggtgtaggagcaggcttggcacctaaaagacctgaggaatcaagcaagtccaagcagtattttctttggaaaacatagattccttctt |
25419897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 5373518 - 5373612
Alignment:
| Q |
192 |
atctaaaggtgtaggagcaggcttggcacctaaaagacctgaggaatcaagcaagtccaagcagtattttctttgggaaatagagattccttctt |
286 |
Q |
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| T |
5373518 |
atctagaggtgtagaagtaggtttggcacctagaagacctgaggattcaagcaaatcaagacaatattttctctgtgaaatagagactccttctt |
5373612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 44577455 - 44577331
Alignment:
| Q |
55 |
gtttgtaatggaaaggaatttcttgcagaccata----gaaacagactccaaatcatctccttggccaaggaatcttaagattgattcccaacattcttg |
150 |
Q |
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|||||||||| ||| ||||| ||||||||| ||| |||||| |||||||||||| || ||| | ||||||| | |||| ||||||| | ||||||| |
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| T |
44577455 |
gtttgtaatgtaaacgaattgcttgcagacaatatattgaaacaaactccaaatcatgtctttgtctaaggaatttgaagactgattcctagcattcttc |
44577356 |
T |
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| Q |
151 |
agg-aaaatctttcactaacatatt |
174 |
Q |
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||| |||| ||||||||||||||| |
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| T |
44577355 |
aggaaaaaaatttcactaacatatt |
44577331 |
T |
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