View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21574_high_19 (Length: 251)
Name: NF21574_high_19
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 38954837 - 38954589
Alignment:
| Q |
1 |
tagttatatatatgtaaatgtgtaaaataagattaagctaaggttatataacaataatttgtacgattaatagaaacaataattattat---gtacttac |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38954837 |
tagttatatatatgtaaatgtgtaaaataagattaagctaaggttatataactataatttgtacgattaatagaaacaataattattattatgtacttac |
38954738 |
T |
|
| Q |
98 |
caaacaaaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38954737 |
caaacaaaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttg |
38954638 |
T |
|
| Q |
198 |
ctacgttgctcttgaaggagtccactcaaaaatacatcattcttctcac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38954637 |
ctacgttgctcttgaaggagtccactcaaaaatacatcattcttttcac |
38954589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 38975724 - 38975846
Alignment:
| Q |
104 |
aaggcctttgatgattgtatcggtgtagtactctggctgtgattcttgcatgtttagaagatgatctatcatggtatttgtacgttctttcttgctacgt |
203 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| || ||||||||||| | ||||||||||||||||||| ||||||||| | | || ||||| ||| |
|
|
| T |
38975724 |
aaggcctttgatgatttgatcagtatagtactcaggttgtgattcttgtaaacttagaagatgatctatcatagtatttgtatgctggtttttgctgcgt |
38975823 |
T |
|
| Q |
204 |
tgctcttgaaggagtccactcaa |
226 |
Q |
| |
|
|| ||||||| |||||| ||||| |
|
|
| T |
38975824 |
tgttcttgaatgagtcctctcaa |
38975846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University