View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_high_23 (Length: 210)
Name: NF21574_high_23
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 360582 - 360778
Alignment:
| Q |
1 |
ttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatcttcataatggccctgtagcaaactttgttaacgagcaacactat |
100 |
Q |
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| T |
360582 |
ttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatcttcagaacggccttgtagcaaactttgttaacgagcaacaccat |
360681 |
T |
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| Q |
101 |
aacttgcaaactttgttgtgaggctcgcgctgatat----tcgcctcatctgtcttggtcttcagcttcttgattttgaggcgatgtatgcacttcc |
193 |
Q |
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| T |
360682 |
aacttgcaaactttgttgtgaggctcgcgctgatattcgatcgcctcatctgtcttggtcttcagcttcctgattttgaggcgatgtatgcacttcc |
360778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14065794 - 14065737
Alignment:
| Q |
1 |
ttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatctt |
58 |
Q |
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| T |
14065794 |
ttattcaagagcaggattaatacctccaagagtgtttcactatctcattgaaaatctt |
14065737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23880189 - 23880132
Alignment:
| Q |
1 |
ttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatctt |
58 |
Q |
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||||||||||||| || |||||||||||||||||| |||||| |||||| | |||||| |
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| T |
23880189 |
ttattcaagagcaggattaatacctccaagagtgtatcactatctcattgaaaatctt |
23880132 |
T |
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