View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21574_high_4 (Length: 449)

Name: NF21574_high_4
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21574_high_4
NF21574_high_4
[»] chr5 (6 HSPs)
chr5 (273-432)||(38783833-38783992)
chr5 (294-432)||(35182010-35182148)
chr5 (287-432)||(19242369-19242514)
chr5 (293-339)||(9211370-9211416)
chr5 (285-432)||(12560148-12560296)
chr5 (281-432)||(9369976-9370127)
[»] chr8 (3 HSPs)
chr8 (287-432)||(9937293-9937438)
chr8 (295-432)||(9939665-9939802)
chr8 (294-432)||(9945713-9945854)
[»] chr4 (3 HSPs)
chr4 (293-411)||(44089715-44089833)
chr4 (295-413)||(38052082-38052200)
chr4 (322-396)||(7672373-7672446)
[»] chr1 (3 HSPs)
chr1 (294-432)||(5050501-5050639)
chr1 (281-432)||(1466784-1466935)
chr1 (281-432)||(35923247-35923398)
[»] chr3 (6 HSPs)
chr3 (281-432)||(28830405-28830556)
chr3 (281-432)||(28838370-28838521)
chr3 (294-432)||(17724560-17724698)
chr3 (294-432)||(19025789-19025927)
chr3 (273-432)||(9450711-9450870)
chr3 (292-430)||(26640729-26640867)
[»] chr7 (5 HSPs)
chr7 (286-432)||(19538747-19538893)
chr7 (294-397)||(19545406-19545509)
chr7 (297-432)||(47228540-47228675)
chr7 (348-432)||(47465726-47465810)
chr7 (369-397)||(9055112-9055140)
[»] chr2 (1 HSPs)
chr2 (292-339)||(7959613-7959660)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 273 - 432
Target Start/End: Complemental strand, 38783992 - 38783833
Alignment:
Q  273 aaatttggactaaaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcac 372  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||    
T  38783992 aaatttggactataattgaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttctacttgagaacaccttaagtaggcac 38783893  T
Q  373 ccctcctatgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38783892 ccctcctaagtgcaatggaggtcaccaacctaggccatggaccttcttgatcatccattg 38783833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 294 - 432
Target Start/End: Complemental strand, 35182148 - 35182010
Alignment:
Q  294 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggagg 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||| | ||||||||||||    
T  35182148 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttctacttgagaacaccttagactagcacccctccaaagtgcaatggagg 35182049  T
Q  394 tcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    ||||||| |||||||||| | |||  |||||||||||||    
T  35182048 tcaccaatctaggccatgaaccttaatgatcatccattg 35182010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 432
Target Start/End: Original strand, 19242369 - 19242514
Alignment:
Q  287 attgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgca 386  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||   | ||||| | | ||||||||   |||||||||||| |||||    
T  19242369 attggaaggggccgcgcgaacgcaggcccccgctgcaacaaattatgatgtaggctccaccacttgggtagaccttagactagcacccctcctaagtgca 19242468  T
Q  387 atggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||||||||   ||||||||||||  ||||||||||| ||||||    
T  19242469 atggaggtcacttgcctaggccatgggccttcttgatcacccattg 19242514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 9211370 - 9211416
Alignment:
Q  293 aggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtag 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9211370 aggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtag 9211416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 432
Target Start/End: Complemental strand, 12560296 - 12560148
Alignment:
Q  285 aaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctactt-gagaacaccttagaaaggcacccctcctatgt 383  Q
    |||||| ||||||| |||||||||||  ||||||| ||||||||||||||||||| ||   | |||| | | | |||||||    |||||||||| | ||    
T  12560296 aaattggaaggggctgcgcgaacgcaaacccccacggcaacaaattatgatgtaggctccaccacttggggtagaccttaggctagcacccctccaaagt 12560197  T
Q  384 gcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    ||||||||||||||   ||||||||||||  ||||||||||| ||||||    
T  12560196 gcaatggaggtcacttgcctaggccatgggccttcttgatcacccattg 12560148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 432
Target Start/End: Complemental strand, 9370127 - 9369976
Alignment:
Q  281 actaaaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctccta 380  Q
    ||||||||||  |||||||||||||||||| ||||| ||  ||||| |||||||||||| ||   | ||||| | | |||||||    |||||||| | |    
T  9370127 actaaaattgggaggggccgcgcgaacgcaagccccaaccacaacatattatgatgtaggctccaccacttgggtagaccttaggctagcaccccttcaa 9370028  T
Q  381 tgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
     |||||||| |||||||   ||||||||||||  ||| ||||||| ||||||    
T  9370027 agtgcaatgaaggtcacttgcctaggccatgggcctttttgatcacccattg 9369976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 432
Target Start/End: Complemental strand, 9937438 - 9937293
Alignment:
Q  287 attgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgca 386  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||    
T  9937438 attggaaggggccgcgcgaacgcaggcccccacagcaacaaactatgatgtaggctgttctacttgagaacaccttagataggcacccctccgaagtgca 9937339  T
Q  387 atggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||    
T  9937338 atggaggtcaccaacctaggccatggaccttcatgatcatccattg 9937293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 295 - 432
Target Start/End: Complemental strand, 9939802 - 9939665
Alignment:
Q  295 gggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggaggt 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||| | |||||||||||||    
T  9939802 gggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggttgttctacttgagaacaccttaggtaggcacccctccaaagtgcaatggaggt 9939703  T
Q  395 caccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||||||||||||| || |||| |||||||||||||    
T  9939702 caccaacctaggccatagaccttcatgatcatccattg 9939665  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 294 - 432
Target Start/End: Complemental strand, 9945854 - 9945713
Alignment:
Q  294 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactg---ttctacttgagaacaccttagaaaggcacccctcctatgtgcaatgg 390  Q
    |||||| |||||||||||||||||||||||||||||||| |||||| |||   |||||||||||||||||||||  || ||||||||| | |||||||||    
T  9945854 ggggccacgcgaacgcaggcccccacagcaacaaattataatgtaggctgctgttctacttgagaacaccttaggcagacacccctccaaagtgcaatgg 9945755  T
Q  391 aggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||||||||||||||||| || |||| ||||| |||||||    
T  9945754 aggtcaccaacctaggccatagaccttcatgatcgtccattg 9945713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 44089833 - 44089715
Alignment:
Q  293 aggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggag 392  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||    
T  44089833 aggggccgcgcgaacgcaggccccctcagcaacaaattatgatgtagactgttctacttgagaacaccttagataggcacccctccaaagtgcaatggag 44089734  T
Q  393 gtcaccaacctaggccatg 411  Q
    |||||||||||||||||||    
T  44089733 gtcaccaacctaggccatg 44089715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 413
Target Start/End: Complemental strand, 38052200 - 38052082
Alignment:
Q  295 gggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggaggt 394  Q
    |||||||||| ||||||||| ||||| ||||||||||| ||||||  |||||||||||||||||||||||| |    |||||||||  ||||||||||||    
T  38052200 gggccgcgcgcacgcaggcctccacaacaacaaattataatgtaggttgttctacttgagaacaccttagatacaagcccctcctaaatgcaatggaggt 38052101  T
Q  395 caccaacctaggccatgga 413  Q
    ||||||||||| |||||||    
T  38052100 caccaacctagaccatgga 38052082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 396
Target Start/End: Original strand, 7672373 - 7672446
Alignment:
Q  322 caacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggaggtca 396  Q
    ||||||||||||||||||  ||||||| | |||||||||||||   ||||||||||  | |||||||||||||||    
T  7672373 caacaaattatgatgtaggttgttctattcgagaacaccttag-gcggcacccctctgaagtgcaatggaggtca 7672446  T

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Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 294 - 432
Target Start/End: Original strand, 5050501 - 5050639
Alignment:
Q  294 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggagg 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    |||||||||||| ||||||||||||    
T  5050501 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggttgttctacttgagaacaccttaggcgagcacccctcctaagtgcaatggagg 5050600  T
Q  394 tcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  5050601 tcaccaacctaggccatggacctttttgatcatccattg 5050639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 281 - 432
Target Start/End: Complemental strand, 1466935 - 1466784
Alignment:
Q  281 actaaaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctccta 380  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||| | | |||||||||||||||||||||||    
T  1466935 actaagattgaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttagaaaggcacccctccta 1466836  T
Q  381 tgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
     |||||||||| ||||||   |||||||||||  ||||||||||| ||||||    
T  1466835 agtgcaatggaagtcacctttctaggccatgggccttcttgatcacccattg 1466784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 432
Target Start/End: Complemental strand, 35923398 - 35923247
Alignment:
Q  281 actaaaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctccta 380  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||| | | |||||||  | ||||||||||||    
T  35923398 actaaaattggaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggcaagcacccctccta 35923299  T
Q  381 tgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
     ||||||||||||||||   ||||||||||||  |||| |||||| ||||||    
T  35923298 agtgcaatggaggtcacttgcctaggccatgggccttcatgatcacccattg 35923247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 281 - 432
Target Start/End: Original strand, 28830405 - 28830556
Alignment:
Q  281 actaaaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctccta 380  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||   | ||||| | | |||||||||| ||||||||||||    
T  28830405 actaaaattggaaggggccgcgcgaacgcaggcccccacaacaacaaattatgatgtaggctccaccacttgggtagaccttagaaaagcacccctccta 28830504  T
Q  381 tgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
     |||||||||||||||||   |||||||||||| ||||||||||||||||||    
T  28830505 agtgcaatggaggtcacctttctaggccatggaccttcttgatcatccattg 28830556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 281 - 432
Target Start/End: Original strand, 28838370 - 28838521
Alignment:
Q  281 actaaaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctccta 380  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||| | | |||||||||||||||||||||||    
T  28838370 actaaaattggagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttagaaaggcacccctccta 28838469  T
Q  381 tgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
     |||||||||||||||||  ||||||||||||  ||||||||||| ||||||    
T  28838470 agtgcaatggaggtcaccttcctaggccatgggccttcttgatcacccattg 28838521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 294 - 432
Target Start/End: Complemental strand, 17724698 - 17724560
Alignment:
Q  294 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggagg 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||| | | ||||||| ||||||||||||||||||||||||||||    
T  17724698 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggaaggcacccctcctatgtgcaatggagg 17724599  T
Q  394 tcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||  ||||||||||||  ||||||||||| ||||||    
T  17724598 tcaccttcctaggccatgggccttcttgatcacccattg 17724560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 294 - 432
Target Start/End: Complemental strand, 19025927 - 19025789
Alignment:
Q  294 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggagg 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||| | | ||||||| ||||||||||||||||||||||||||||    
T  19025927 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggaaggcacccctcctatgtgcaatggagg 19025828  T
Q  394 tcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||  ||||||||||||  ||||||||||| ||||||    
T  19025827 tcaccttcctaggccatgggccttcttgatcacccattg 19025789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 273 - 432
Target Start/End: Complemental strand, 9450870 - 9450711
Alignment:
Q  273 aaatttggactaaaattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcac 372  Q
    ||||||| | ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||| | | ||||||| |||||||    
T  9450870 aaatttgaaataagattggagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttaggaaggcac 9450771  T
Q  373 ccctcctatgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    |||||| | |||||||||||||||||  ||||||||||||  ||||||||||| ||||||    
T  9450770 ccctccaaagtgcaatggaggtcaccttcctaggccatgggccttcttgatcacccattg 9450711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 430
Target Start/End: Complemental strand, 26640867 - 26640729
Alignment:
Q  292 aaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatgga 391  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |   | ||||| | | ||||||||   |||||||||||| ||||||||||    
T  26640867 aaggggccgcgcgaacgcaggcccccactgcaacaaattatgatgtaggttccaccacttgggtagaccttagactagcacccctcctaagtgcaatgga 26640768  T
Q  392 ggtcaccaacctaggccatggatcttcttgatcatccat 430  Q
    ||||||    |||||||||||  ||||||||||| ||||    
T  26640767 ggtcacttgtctaggccatgggccttcttgatcacccat 26640729  T

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Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 286 - 432
Target Start/End: Original strand, 19538747 - 19538893
Alignment:
Q  286 aattgaaaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgc 385  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||  | | ||||||| |  |||||||||| | ||||    
T  19538747 aattgaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttaggtagaccttaggatagcacccctccaaagtgc 19538846  T
Q  386 aatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    ||||||||||||   ||||||||||||  |||| |||||| ||||||    
T  19538847 aatggaggtcactttcctaggccatgggccttcgtgatcacccattg 19538893  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 19545406 - 19545509
Alignment:
Q  294 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggagg 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||   | ||||| | | |||||||||  |||||||||| | ||||||||||||    
T  19545406 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctccaccacttgggtagaccttagaagagcacccctccaaagtgcaatggagg 19545505  T
Q  394 tcac 397  Q
    ||||    
T  19545506 tcac 19545509  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 432
Target Start/End: Complemental strand, 47228675 - 47228540
Alignment:
Q  297 gccgcgcgaacgcaggcccccacagcaacaaattatgatgtagactgttctacttgagaacaccttagaaaggcacccctcctatgtgcaatggaggtca 396  Q
    ||||||||||||||| ||||| |||||||||||||| |||||| ||   | |||||   | ||||||||||  ||||||||||| |||||||||||||||    
T  47228675 gccgcgcgaacgcagaccccctcagcaacaaattataatgtaggctccaccacttggatagaccttagaaaaacacccctcctaagtgcaatggaggtca 47228576  T
Q  397 ccaacctaggccatggatcttcttgatcatccattg 432  Q
    ||   ||||||||| |  |||| |||||| ||||||    
T  47228575 cctttctaggccataggccttcatgatcacccattg 47228540  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 47465726 - 47465810
Alignment:
Q  348 acttgagaacaccttagaaaggcacccctcctatgtgcaatggaggtcaccaacctaggccatggatcttcttgatcatccattg 432  Q
    ||||||| | |||||||||| |||||||||| | |||||||||||| ||||   |||||||||||  |||| |||||| ||||||    
T  47465726 acttgagtagaccttagaaaagcacccctcccaagtgcaatggaggccacctttctaggccatgggccttcatgatcacccattg 47465810  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 397
Target Start/End: Original strand, 9055112 - 9055140
Alignment:
Q  369 gcacccctcctatgtgcaatggaggtcac 397  Q
    |||||||||||||||||||||||||||||    
T  9055112 gcacccctcctatgtgcaatggaggtcac 9055140  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 7959613 - 7959660
Alignment:
Q  292 aaggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtag 339  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  7959613 aaggggccgcgcgaacgcagacccccacagcaacaaattatgatgtag 7959660  T

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