View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21574_high_7 (Length: 390)

Name: NF21574_high_7
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21574_high_7
NF21574_high_7
[»] chr4 (7 HSPs)
chr4 (13-229)||(23965378-23965595)
chr4 (240-384)||(23965854-23965993)
chr4 (129-225)||(23989483-23989580)
chr4 (133-225)||(23982805-23982898)
chr4 (325-358)||(49225474-49225507)
chr4 (280-359)||(21344815-21344895)
chr4 (303-358)||(29195094-29195150)
[»] chr1 (3 HSPs)
chr1 (303-358)||(37046984-37047040)
chr1 (295-357)||(15581154-15581217)
chr1 (303-362)||(4824966-4825026)
[»] chr8 (3 HSPs)
chr8 (303-357)||(6530807-6530862)
chr8 (304-363)||(26688859-26688919)
chr8 (325-357)||(32992778-32992810)
[»] chr7 (4 HSPs)
chr7 (304-357)||(5273612-5273666)
chr7 (304-357)||(48125196-48125250)
chr7 (318-358)||(35328911-35328951)
chr7 (325-357)||(47274147-47274179)
[»] chr6 (1 HSPs)
chr6 (304-357)||(14557962-14558016)
[»] scaffold0260 (1 HSPs)
scaffold0260 (325-357)||(15365-15397)
[»] chr3 (2 HSPs)
chr3 (293-356)||(18316509-18316573)
chr3 (325-357)||(47079701-47079733)
[»] chr2 (1 HSPs)
chr2 (304-359)||(41138325-41138381)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 23965378 - 23965595
Alignment:
Q  13 aatatgaggatcagttgagtgaagcttcaaatgaggtttcatctgagagtgagtggaatcaggatttgtctgaggatcataatgatgatattcatgagta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23965378 aatatgaggatcagttgagtgaagcttcaaatgaggtttcatctgagagtgagtggaatcaggatttgtctgaggatcataatgatgatattcatgagta 23965477  T
Q  113 tcagtggaatgtacgacacaatgagatctttgaacatgtttacagttgtttctctgtctcatctctgaatagggtatgtcaccttatgcatatctaa-tt 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23965478 tcagtggaatatacgacacaatgagatctttgaacatgtttacagttgtttctctgtctcatctctgaatagggtatgtcaccttatgcatatctaactt 23965577  T
Q  212 ctctaacccaatttcatt 229  Q
    ||||||||||||||||||    
T  23965578 ctctaacccaatttcatt 23965595  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 23965854 - 23965993
Alignment:
Q  240 aagaaggtaaactagcacacctaaataaatataatattgaggagagttaaacataagacttttagaggagcacactctaggttcgaagccaacaacacca 339  Q
    |||||| ||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  23965854 aagaagctaaactagcacacctaaataaata-----ttgaggagagttaaacataagacttttagaggagcactctctaggtccgaagccaacaacacca 23965948  T
Q  340 gaccaacccaagtgggtttatgtgactcctaaactatgaaggacc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23965949 gaccaacccaagtgggtttatgtgactcctaaactatgaaggacc 23965993  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 23989483 - 23989580
Alignment:
Q  129 cacaatgagatctttgaacatgtttacagttgtttctctgtctcatctctgaatagggtatgtcaccttatgcatatctaa-ttctctaacccaattt 225  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||| | ||| |||||||| ||||||||||||||||    
T  23989483 cacaatgagatctttgaacatgtttacagttgtttcccggtctcatctcttaaaagggtatgtcacatgatgtatatctaacttctctaacccaattt 23989580  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 23982805 - 23982898
Alignment:
Q  133 atgagatctttgaacatgtttacagttgtttctctgtctcatctctgaatagggtatgtcaccttatgcatatctaa-ttctctaacccaattt 225  Q
    |||||| |||||||||  |||||||||||||  |  |||| ||||| || |||||||||||| | ||| |||||||| ||||||||||||||||    
T  23982805 atgagacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaacttctctaacccaattt 23982898  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 49225474 - 49225507
Alignment:
Q  325 aagccaacaacaccagaccaacccaagtgggttt 358  Q
    ||||||||| ||||||||||||||||||||||||    
T  49225474 aagccaacaccaccagaccaacccaagtgggttt 49225507  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 21344895 - 21344815
Alignment:
Q  280 ggagagttaaacataagacttttagaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggttta 359  Q
    ||||| || ||||| |||| || |||||||||||||| | ||| | ||||||||| || ||| ||||||||||||||||||    
T  21344895 ggagaattgaacatgagaccttgagaggagcacactccaaggtcccaagccaacatcatcaggccaacccaagtgggttta 21344815  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 29195150 - 29195094
Alignment:
Q  303 agaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggttt 358  Q
    |||||||||||||| | ||| | ||||||||| |||||| |||||||||||||||||    
T  29195150 agaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttt 29195094  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 37047040 - 37046984
Alignment:
Q  303 agaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggttt 358  Q
    |||||||||||||| | ||| | ||||||||| ||||||||||||||||||||||||    
T  37047040 agaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggttt 37046984  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 15581154 - 15581217
Alignment:
Q  295 agacttttagaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggtt 357  Q
    |||| ||||||||||||||||| | ||| | ||||||||| |||||| ||||||||||||||||    
T  15581154 agacctttagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 15581217  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 4825026 - 4824966
Alignment:
Q  303 agaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggtttatgt 362  Q
    |||||||||||||| | ||| | ||||||||| || |||||||||||||||| ||||||||    
T  4825026 agaggagcacactccaaggtcccaagccaacaccatcagaccaacccaagtgtgtttatgt 4824966  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 6530862 - 6530807
Alignment:
Q  303 agaggagcacactc-taggttcgaagccaacaacaccagaccaacccaagtgggtt 357  Q
    |||||||||||||| ||||| | ||||||||| |||||| ||||||||||||||||    
T  6530862 agaggagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggtt 6530807  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 26688919 - 26688859
Alignment:
Q  304 gaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggtttatgtg 363  Q
    ||||||||||||| | ||| | ||||||||| |||||| |||||||||||||||| |||||    
T  26688919 gaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttgatgtg 26688859  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 32992810 - 32992778
Alignment:
Q  325 aagccaacaacaccagaccaacccaagtgggtt 357  Q
    ||||||||| |||||||||||||||||||||||    
T  32992810 aagccaacatcaccagaccaacccaagtgggtt 32992778  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 5273612 - 5273666
Alignment:
Q  304 gaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggtt 357  Q
    ||||||||||||||| ||| | ||||||||| |||||| ||||||||||||||||    
T  5273612 gaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt 5273666  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 48125196 - 48125250
Alignment:
Q  304 gaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggtt 357  Q
    ||||||||||||| | ||| | ||||||||| |||||||||||||||||||||||    
T  48125196 gaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 48125250  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 35328911 - 35328951
Alignment:
Q  318 aggttcgaagccaacaacaccagaccaacccaagtgggttt 358  Q
    |||||| ||||||||| |||||| |||||||||||||||||    
T  35328911 aggttccaagccaacaccaccaggccaacccaagtgggttt 35328951  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 47274179 - 47274147
Alignment:
Q  325 aagccaacaacaccagaccaacccaagtgggtt 357  Q
    |||| ||||||||||||||||||||||||||||    
T  47274179 aagctaacaacaccagaccaacccaagtgggtt 47274147  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 14558016 - 14557962
Alignment:
Q  304 gaggagcacact-ctaggttcgaagccaacaacaccagaccaacccaagtgggtt 357  Q
    |||||||||||| | |||| | ||||||||| |||||||||||||||||||||||    
T  14558016 gaggagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

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Target: scaffold0260 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 15365 - 15397
Alignment:
Q  325 aagccaacaacaccagaccaacccaagtgggtt 357  Q
    ||||||||| |||||||||||||||||||||||    
T  15365 aagccaacaccaccagaccaacccaagtgggtt 15397  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 18316509 - 18316573
Alignment:
Q  293 taagacttttagaggagcacactcta-ggttcgaagccaacaacaccagaccaacccaagtgggt 356  Q
    |||||| || |||||||||||||| | ||| | |||||| || ||||||||||||||||||||||    
T  18316509 taagaccttgagaggagcacactccaaggtcccaagccagcaccaccagaccaacccaagtgggt 18316573  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 47079733 - 47079701
Alignment:
Q  325 aagccaacaacaccagaccaacccaagtgggtt 357  Q
    ||||||||| |||||||||||||||||||||||    
T  47079733 aagccaacaccaccagaccaacccaagtgggtt 47079701  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 41138381 - 41138325
Alignment:
Q  304 gaggagcacactct-aggttcgaagccaacaacaccagaccaacccaagtgggttta 359  Q
    |||||||||||| | |||||| ||| ||||| ||||| |||||||||||||||||||    
T  41138381 gaggagcacactttcaggttctaagtcaacaccaccataccaacccaagtgggttta 41138325  T

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