View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_high_9 (Length: 372)
Name: NF21574_high_9
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 48438796 - 48439150
Alignment:
| Q |
1 |
agcaaattgtcaataccttctctatatgatctttgttggattgggtacatcacaataatctcaatcaacattcctactgcaatggagcagatacagaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48438796 |
agcaaattgtcaataccttctctatatgatctttgttggattgggtacatcacaataatctcaatcaacattcctactgcaatggagcagatacagaagt |
48438895 |
T |
|
| Q |
101 |
ttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctagagtcgtcgaataaatcaaattaagaaaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48438896 |
ttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctagagtcgtcgaataaatcaaattaagaaaacac |
48438995 |
T |
|
| Q |
201 |
ttgctagtaacttatacaaaactnnnnnnnnnncacaaaagtgtaccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttcc |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48438996 |
ttgctagtaacttatacaaaactaaaaaaaaaacacaaaagtgtaccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttcc |
48439095 |
T |
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| Q |
301 |
aaagaaggtatgaacaccagtggcgatgacaacagcttcaatctcaccttgtttg |
355 |
Q |
| |
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| T |
48439096 |
aaagaaggtatgaacaccagtggcgatgacaacagcttcaatctcaccttgtttg |
48439150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 355
Target Start/End: Complemental strand, 44530594 - 44530483
Alignment:
| Q |
244 |
taccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatc |
343 |
Q |
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| T |
44530594 |
tacctgttggaagtgaccaacttggtttgtagtatctacaaggtgagcagctttaccgaaaaaggtatgaacaccagtagctatgaccacgccttcgatc |
44530495 |
T |
|
| Q |
344 |
tcaccttgtttg |
355 |
Q |
| |
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|| ||||||||| |
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| T |
44530494 |
tctccttgtttg |
44530483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 21982572 - 21982679
Alignment:
| Q |
244 |
taccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatc |
343 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||||| ||| || || |
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| T |
21982572 |
taccttttggaagtgaccaacattgttggtgctatcaacaaggtgtgcagccttcccaaagaaggtgtggacaccagtggcaatgacaatagcctcgatt |
21982671 |
T |
|
| Q |
344 |
tcaccttg |
351 |
Q |
| |
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|||||||| |
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|
| T |
21982672 |
tcaccttg |
21982679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 21982190 - 21982307
Alignment:
| Q |
7 |
ttgtcaataccttctctatatgatctttgttggattgggtacatcacaataatctcaatcaacattcctactgcaatggagcagatacagaagtttccaa |
106 |
Q |
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||||||||||| ||||| || | ||| | |||||| || ||||||||||| || ||||||| |||||| || ||||| ||||||||||||||||| |||| |
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| T |
21982190 |
ttgtcaataccatctctgtaagctctattttggatgggatacatcacaatgatttcaatcaccattcccacagcaattgagcagatacagaagttaccaa |
21982289 |
T |
|
| Q |
107 |
ttgatgtcaacacctaat |
124 |
Q |
| |
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| |||||||||||||||| |
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| T |
21982290 |
tggatgtcaacacctaat |
21982307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 45199478 - 45199556
Alignment:
| Q |
243 |
gtaccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacaccagt |
321 |
Q |
| |
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||||||||||||| |||||||| | ||||||||| || || | ||||||||||| ||||||||||| || |||||||| |
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| T |
45199478 |
gtaccttttggaaatgaccaacttggttagtgctgtcgaccaaatgagcagccttaccaaagaaggtgtgcacaccagt |
45199556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 351
Target Start/End: Complemental strand, 3152644 - 3152580
Alignment:
| Q |
287 |
tgagcagcctttccaaagaaggtatgaacaccagtggcgatgacaacagcttcaatctcaccttg |
351 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||||| ||||| |
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| T |
3152644 |
tgagcagccttgccaaagaaggtatgaactccagtcgcaataacaacagcttctatctctccttg |
3152580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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