View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21574_low_13 (Length: 357)

Name: NF21574_low_13
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21574_low_13
NF21574_low_13
[»] chr6 (8 HSPs)
chr6 (21-339)||(5579527-5579852)
chr6 (161-227)||(10031555-10031621)
chr6 (159-208)||(6751888-6751937)
chr6 (159-206)||(19369823-19369870)
chr6 (172-225)||(2140500-2140553)
chr6 (159-207)||(22745962-22746010)
chr6 (172-207)||(29959180-29959215)
chr6 (172-226)||(17168880-17168934)
[»] scaffold0314 (1 HSPs)
scaffold0314 (159-211)||(8949-9001)
[»] chr7 (9 HSPs)
chr7 (160-228)||(5937428-5937496)
chr7 (160-217)||(9050140-9050197)
chr7 (159-206)||(1885579-1885626)
chr7 (160-205)||(2144546-2144591)
chr7 (159-217)||(22801747-22801805)
chr7 (160-217)||(9037724-9037781)
chr7 (161-206)||(48964070-48964115)
chr7 (166-202)||(2143866-2143902)
chr7 (176-212)||(31377000-31377036)
[»] chr2 (7 HSPs)
chr2 (159-206)||(43586011-43586058)
chr2 (159-207)||(13501084-13501132)
chr2 (160-210)||(14450802-14450852)
chr2 (159-220)||(10535765-10535826)
chr2 (160-213)||(18512149-18512202)
chr2 (161-202)||(24067263-24067304)
chr2 (161-217)||(42665603-42665659)
[»] chr8 (8 HSPs)
chr8 (159-217)||(26915246-26915304)
chr8 (160-217)||(42874517-42874574)
chr8 (159-215)||(24295143-24295199)
chr8 (158-202)||(31119097-31119141)
chr8 (161-207)||(27733852-27733898)
chr8 (158-213)||(34073983-34074038)
chr8 (167-217)||(34739075-34739125)
chr8 (160-228)||(10497823-10497891)
[»] chr3 (2 HSPs)
chr3 (159-217)||(49179721-49179779)
chr3 (159-207)||(14338489-14338537)
[»] chr1 (6 HSPs)
chr1 (159-217)||(40686764-40686822)
chr1 (163-226)||(24462280-24462343)
chr1 (166-215)||(14332406-14332454)
chr1 (161-202)||(18946042-18946083)
chr1 (160-217)||(40176598-40176655)
chr1 (160-204)||(46748915-46748959)
[»] chr4 (6 HSPs)
chr4 (161-206)||(13307883-13307928)
chr4 (161-212)||(44362666-44362717)
chr4 (159-217)||(37496699-37496757)
chr4 (159-205)||(13117436-13117482)
chr4 (172-206)||(28663498-28663532)
chr4 (172-213)||(49887755-49887796)
[»] scaffold0024 (1 HSPs)
scaffold0024 (161-217)||(18116-18172)
[»] chr5 (6 HSPs)
chr5 (163-215)||(30080511-30080563)
chr5 (158-206)||(21319950-21319998)
chr5 (182-217)||(309153-309188)
chr5 (159-228)||(19167582-19167652)
chr5 (159-217)||(26205766-26205824)
chr5 (172-224)||(11596474-11596526)
[»] scaffold0504 (1 HSPs)
scaffold0504 (161-212)||(8705-8756)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 339
Target Start/End: Complemental strand, 5579852 - 5579527
Alignment:
Q  21 ctggctggtgctgcaaggttcttttctttcttttgcatgccctatttttataataattctactcgaatctctattccacggacacttatgattgaatgca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5579852 ctggctggtgctgcaaggttcttttctttcttttgcatgccctatttttataataattctactcgaatctctattccacggacacttatgattgaatgca 5579753  T
Q  121 tgttctg-------acacgtgtcatgcctaacaccgacagaatgtcgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcg 213  Q
    |||||||       |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5579752 tgttctggtgtctgacacgtattatgcctaacaccgacagaatgtcgacacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtcg 5579653  T
Q  214 acgtatttgtgtcagcatcgtatccagtatctgtgtatgtgttcgtgcatgatagactcgagtcgatctcatggaaacatctaatagtttatgattgttg 313  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5579652 acgtattcgtgtcagcatcgtatccagtatctgtgtctgtgttcgtgcatgatagactcgagtcgatctcatggaaacatctaatagtttatgattgttg 5579553  T
Q  314 atgatgaattggtcaggtaatctgtg 339  Q
    ||||||||||||||||||||||||||    
T  5579552 atgatgaattggtcaggtaatctgtg 5579527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 10031621 - 10031555
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatttgtgtca 227  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacgtgtttgtgtca 10031555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 6751888 - 6751937
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcga 208  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  6751888 cgacacttgtgattacattgaattatgtcattttctcaaaattttatcga 6751937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 19369870 - 19369823
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatc 206  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  19369870 cgacacttgtgattacattgaattatgtcattttctcaaaattttatc 19369823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 2140500 - 2140553
Alignment:
Q  172 tacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatttgtgt 225  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||| ||||||||||    
T  2140500 tacattgaattatgtcattttctcaaattattatcaatgtcgatgtatttgtgt 2140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 22746010 - 22745962
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcg 207  Q
    |||||||||||| ||||||||| |||  |||||||||||||||||||||    
T  22746010 cgacacttgtgattacattgaaatataacattttctcaaaattttatcg 22745962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 29959215 - 29959180
Alignment:
Q  172 tacattgaactatgtcattttctcaaaattttatcg 207  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29959215 tacattgaattatgtcattttctcaaaattttatcg 29959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 17168934 - 17168880
Alignment:
Q  172 tacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatttgtgtc 226  Q
    ||||||||| ||||||||||| ||||| | ||||| |||||||||| ||||||||    
T  17168934 tacattgaattatgtcattttttcaaattattatcaatgtcgacgtgtttgtgtc 17168880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 9001 - 8949
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgt 211  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  9001 cgacacttgtgattacgttgaattatgtcattttctcaaaattttatcgatgt 8949  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 5937428 - 5937496
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatttgtgtcag 228  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||  ||| ||||| | ||||||||    
T  5937428 gacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgttgacgtgtctgtgtcag 5937496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 9050140 - 9050197
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    ||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||    
T  9050140 gacacatgtgattatattgaactatgtcattttttcaaaattttatctatgtcgacgt 9050197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 1885626 - 1885579
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatc 206  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  1885626 cgacacttgtgattacattgaattatgtcattttttcaaaattttatc 1885579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 2144546 - 2144591
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttat 205  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  2144546 gacacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 22801747 - 22801805
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||| |||| ||| |||||    
T  22801747 cgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgttgacgt 22801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 9037724 - 9037781
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    ||||| ||||| || |||||||||| ||||||| ||||||||||||| |||| |||||    
T  9037724 gacacatgtgattatattgaactatatcattttttcaaaattttatctatgttgacgt 9037781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 48964070 - 48964115
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatc 206  Q
    |||||||||| || |||||| ||||||||||||||| |||||||||    
T  48964070 acacttgtgattaaattgaattatgtcattttctcacaattttatc 48964115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 2143866 - 2143902
Alignment:
Q  166 tgtgactacattgaactatgtcattttctcaaaattt 202  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 31377036 - 31377000
Alignment:
Q  176 ttgaactatgtcattttctcaaaattttatcgatgtc 212  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  31377036 ttgaattatgtcattttctcaaaattttattgatgtc 31377000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 43586011 - 43586058
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatc 206  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  43586011 cgacacttgtgattacattgaattatgtcattttctcaaaattttatc 43586058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 13501084 - 13501132
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcg 207  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatcg 13501132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 14450802 - 14450852
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatg 210  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||| ||||||    
T  14450802 gacacttgtgattacattgaattatgtgattttctcaaaattttgtcgatg 14450852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 10535765 - 10535826
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatt 220  Q
    |||||||| ||| |||| |||| ||||||||||||||||| | |||||| ||||| ||||||    
T  10535765 cgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtatt 10535826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 18512149 - 18512202
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcg 213  Q
    ||||| ||||| ||||||||| ||| | |||||||||||||||||||| |||||    
T  18512149 gacacatgtgattacattgaattatattattttctcaaaattttatcggtgtcg 18512202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 24067304 - 24067263
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattt 202  Q
    |||||||||| ||||||||| |||||||||||| ||||||||    
T  24067304 acacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 42665659 - 42665603
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||| ||||| |||||||||  ||||||| || |||||||||||||||| |||||||    
T  42665659 acacatgtgattacattgaatcatgtcatcttttcaaaattttatcgatatcgacgt 42665603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 26915246 - 26915304
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||||||||| |||||| || |||||||||||||||||||||||||  |||||||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgt 26915304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 42874574 - 42874517
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    ||||||||||| ||||||||| ||||||||||||||||||| ||| || |||||||||    
T  42874574 gacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgt 42874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 24295143 - 24295199
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgac 215  Q
    |||||||||||| |||||| || | ||||||||||||| ||||||||||||||||||    
T  24295143 cgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtcgac 24295199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 31119141 - 31119097
Alignment:
Q  158 tcgacacttgtgactacattgaactatgtcattttctcaaaattt 202  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||    
T  31119141 tcgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 27733898 - 27733852
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatcg 207  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaattttatcg 27733852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 34073983 - 34074038
Alignment:
Q  158 tcgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcg 213  Q
    ||||||||| ||| |||||| || ||||||||||| |||||||||||||| |||||    
T  34073983 tcgacacttatgattacattaaattatgtcattttttcaaaattttatcggtgtcg 34074038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 34739075 - 34739125
Alignment:
Q  167 gtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||||||||||| ||||||||||||||| | | ||||||||||| ||||    
T  34739075 gtgactacattgaattatgtcattttctcatattattatcgatgtcaacgt 34739125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 10497823 - 10497891
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatttgtgtcag 228  Q
    ||||||||||| |||||  || ||||| |||||||||||||||||||  ||||| ||| | ||||||||    
T  10497823 gacacttgtgattacatcaaattatgttattttctcaaaattttatccgtgtcggcgtgtctgtgtcag 10497891  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 49179721 - 49179779
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||||||||| ||||| ||| ||||||| |||||||||||||||||| |||||||||    
T  49179721 cgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtcgacgt 49179779  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 14338489 - 14338537
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcg 207  Q
    ||||| |||||| ||||||||| ||||||||||| ||||||||||||||    
T  14338489 cgacatttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 40686764 - 40686822
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||||| ||| ||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  40686764 cgacacttatgattacattgaattatatcattttatcaaaattttatcgatgtcgacgt 40686822  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 24462280 - 24462343
Alignment:
Q  163 acttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatttgtgtc 226  Q
    |||||||| ||||||||| ||||||||||| ||||||||| |||  ||||||||||| ||||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaatttgatcagtgtcgacgtatctgtgtc 24462343  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 14332454 - 14332406
Alignment:
Q  166 tgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgac 215  Q
    ||||| ||||||||| |||||||||||||| ||||||||||| |||||||    
T  14332454 tgtgattacattgaattatgtcattttctc-aaattttatcggtgtcgac 14332406  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 18946042 - 18946083
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattt 202  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  18946042 acactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 40176655 - 40176598
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    ||||| ||||| |||||||||  | ||||||||||||||||||||||| ||| |||||    
T  40176655 gacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgttgacgt 40176598  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 46748915 - 46748959
Alignment:
Q  160 gacacttgtgactacattgaactatgtcattttctcaaaatttta 204  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||    
T  46748915 gacatttgtgattacattgaactatgtcgttttttcaaaatttta 46748959  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 13307928 - 13307883
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatc 206  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  13307928 acacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 44362717 - 44362666
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtc 212  Q
    |||||||||| |||||| || |||||||||||||||||||||||||| ||||    
T  44362717 acacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtc 44362666  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 37496757 - 37496699
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||||||||| ||||||||| ||||||||||||||||||  |||||| |||| ||||    
T  37496757 cgacacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtcaacgt 37496699  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 13117482 - 13117436
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttat 205  Q
    |||||||||||| ||||||||| | |||||||||||| |||||||||    
T  13117482 cgacacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 28663532 - 28663498
Alignment:
Q  172 tacattgaactatgtcattttctcaaaattttatc 206  Q
    ||||||||| |||||||||||||||||||||||||    
T  28663532 tacattgaattatgtcattttctcaaaattttatc 28663498  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 49887796 - 49887755
Alignment:
Q  172 tacattgaactatgtcattttctcaaaattttatcgatgtcg 213  Q
    ||||||||| ||||||||||  ||||||||||||||||||||    
T  49887796 tacattgaattatgtcatttcttcaaaattttatcgatgtcg 49887755  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 18116 - 18172
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    ||||||| || ||||||||| ||||| |||||||||||||||||||| |||||||||    
T  18116 acacttgcgattacattgaattatgttattttctcaaaattttatcggtgtcgacgt 18172  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 30080511 - 30080563
Alignment:
Q  163 acttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgac 215  Q
    |||||||| ||||||||| |||||||||||||||||||||||||  |||||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgac 30080563  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 21319950 - 21319998
Alignment:
Q  158 tcgacacttgtgactacattgaactatgtcattttctcaaaattttatc 206  Q
    ||||||||||||| ||||||||| ||| ||||||| |||||||||||||    
T  21319950 tcgacacttgtgattacattgaattatatcattttttcaaaattttatc 21319998  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 309188 - 309153
Alignment:
Q  182 tatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||||||||||||||||||||||| |||||||||    
T  309188 tatgtcattttctcaaaattttatcggtgtcgacgt 309153  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 19167582 - 19167652
Alignment:
Q  159 cgacacttgtgactacattgaactatgtca-ttttctcaaaattttatcgatgtcgacgtatttgtgtcag 228  Q
    |||||||||||| ||||||||| | ||||| |||| |||||||||||||| |||| |||| | ||||||||    
T  19167582 cgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtcag 19167652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 26205766 - 26205824
Alignment:
Q  159 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtcgacgt 217  Q
    |||||| | ||| |||| |||| |||||||||||||||||||||||||| | |||||||    
T  26205766 cgacacctatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgt 26205824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 11596474 - 11596526
Alignment:
Q  172 tacattgaactatgtcattttctcaaaattttatcgatgtcgacgtatttgtg 224  Q
    ||||||||| ||||||||||||||||| | |||||| | ||||||| ||||||    
T  11596474 tacattgaattatgtcattttctcaaattattatcggtatcgacgtgtttgtg 11596526  T

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Target: scaffold0504 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 8705 - 8756
Alignment:
Q  161 acacttgtgactacattgaactatgtcattttctcaaaattttatcgatgtc 212  Q
    |||||||||  |||||||||  |||||||||||||||||||||||| |||||    
T  8705 acacttgtggttacattgaatcatgtcattttctcaaaattttatccatgtc 8756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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