View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_low_15 (Length: 348)
Name: NF21574_low_15
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 199 - 332
Target Start/End: Original strand, 7499702 - 7499834
Alignment:
| Q |
199 |
ttcatgatcaagaaacataaaaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatataaacaattagatcagacttcagagc |
298 |
Q |
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| T |
7499702 |
ttcatgatctagaaacataaaaaactgagacatcattctaaaaccagccatgtattaacagatagtgc-atatataaacaattagatcagacttcagagc |
7499800 |
T |
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| Q |
299 |
cacagaaacttaagaactgttattgaagaataat |
332 |
Q |
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| T |
7499801 |
cacagaaactttagaactgttattgaagaataat |
7499834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 7488217 - 7488416
Alignment:
| Q |
4 |
agacaacttttatggaaccgacacaaacgtttaagacagaaaacaccgttgcaactaccataggattctattcttataggat---gaaagacgttgttgg |
100 |
Q |
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| T |
7488217 |
agacaactcttatgaaaccaacacaaaccttggagacagaaaacgccattgcaactaccatatgattccattcttataaaagtgcgacaattgctgttgg |
7488316 |
T |
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| Q |
101 |
aaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacatagggtattgttttataaagaatcatgagactatggctatcagacatgtt |
200 |
Q |
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| T |
7488317 |
aaaagagggatttgatgtgtattacggtgtgacatgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggactatcagacatgtt |
7488416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 7475400 - 7475532
Alignment:
| Q |
24 |
acacaaacgtttaagacagaaaacaccgttgcaactaccataggattctattcttataggatgaaagacgttgttggaaaagaagggtttgatgtgtgtt |
123 |
Q |
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| T |
7475400 |
acacaaacctttgagacagaaaacaccattgaaactaccatatgattcaattgttataggttgatgggagttgctggaaaagggggatttgatgtgcatt |
7475499 |
T |
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| Q |
124 |
acgttgtcacatgagagaagggttacatagggt |
156 |
Q |
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| T |
7475500 |
aggttgtcacgtgagagaagggttatatagggt |
7475532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 6943733 - 6943675
Alignment:
| Q |
94 |
ttgttggaaaagaagggtttgatgtgtgttacgttgtcacatgagagaagggttacata |
152 |
Q |
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| T |
6943733 |
ttgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacata |
6943675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 8139134 - 8139028
Alignment:
| Q |
219 |
aaaactgagacatcattctaaagccagccatgtattaacagatagtgccatatat-aaacaattagatcagacttcagagccacagaaacttaagaactg |
317 |
Q |
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| T |
8139134 |
aaaactgagacataattccaaagtcagccatgtattaactgatagtg-catacataaaacaattaga-------tgagagccacagaaactttagaactg |
8139043 |
T |
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| Q |
318 |
ttattgaagaataat |
332 |
Q |
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| T |
8139042 |
ttacggaagaataat |
8139028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 232
Target Start/End: Complemental strand, 8139198 - 8139168
Alignment:
| Q |
202 |
atgatcaagaaacataaaaaactgagacatc |
232 |
Q |
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| T |
8139198 |
atgatcaagaaacataaaaaactgagacatc |
8139168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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