View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_low_16 (Length: 332)
Name: NF21574_low_16
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 7297553 - 7297855
Alignment:
| Q |
20 |
ggatcttcatttcttcttcctggcattgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7297553 |
ggatcttcatttcttcttcctggcattgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaa |
7297652 |
T |
|
| Q |
120 |
attgatcatagtatgctttgacaacatttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaataattccc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7297653 |
attgatcatagtatgctttgacaacatttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaataattccc |
7297752 |
T |
|
| Q |
220 |
cataaaaaatacaaggtgtttcctaaggtataaattaagaaacggcacacaaaaatatacaagaaacacaatataaaaaatcaggtaacaatatttacct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7297753 |
cataaaaaatacaaggtgtttcctaaggtataaattaagaaacggcacacaaaaatatacaagaaacacaatataaaaaatcaggtaacaatatttacct |
7297852 |
T |
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| Q |
320 |
ttg |
322 |
Q |
| |
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||| |
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| T |
7297853 |
ttg |
7297855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 7292518 - 7292710
Alignment:
| Q |
20 |
ggatcttcatttcttcttcctggcattgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaa |
119 |
Q |
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| T |
7292518 |
ggatcttcatttcttcttccaaccatcgttagaacaatgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaa |
7292617 |
T |
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| Q |
120 |
attgatcatagtatgctttgacaacatttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaat |
212 |
Q |
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|||| || ||||| || ||||| ||||||||||||||||||| | ||||||||||||| | ||||||||| |||||||| || |||||||||| |
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| T |
7292618 |
attgctcgtagtaagccttgacgacatttgagggacttgtgtcgctgatgtaaatgttacccttattgttatctataccttcgggaacctaat |
7292710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 32627438 - 32627604
Alignment:
| Q |
46 |
tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcatagtatgctttgacaaca |
145 |
Q |
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||||| || |||||||||||||||||||| ||| || ||||||||||||||||||| ||||| ||| ||| ||||| | ||||| || ||||| ||| |
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| T |
32627438 |
tgttataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgaca |
32627537 |
T |
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| Q |
146 |
tttgagggacttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaat |
212 |
Q |
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|| |||| |||||| | || |||||||||| ||| ||||| ||| |||||| |||||||||| |
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| T |
32627538 |
ttcaaggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaat |
32627604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 32709019 - 32709074
Alignment:
| Q |
46 |
tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaa |
101 |
Q |
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|||||||| ||||| ||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
32709019 |
tgttagaatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaa |
32709074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 21943171 - 21943285
Alignment:
| Q |
46 |
tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcatagtatgctttgacaaca |
145 |
Q |
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||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||| || || ||||| | |||||| |||||||| || |||| ||| |
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| T |
21943171 |
tgttataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatctctatgaaattgctcatagtaagccttgaagaca |
21943270 |
T |
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| Q |
146 |
tttgagggacttgtg |
160 |
Q |
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|||||||| |||||| |
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| T |
21943271 |
tttgaggggcttgtg |
21943285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 8030547 - 8030463
Alignment:
| Q |
44 |
attgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcat |
128 |
Q |
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||||| |||||||| | |||||| ||||| ||||| |||||||||||||||||||| | ||||| ||||||| |||||| |||| |
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| T |
8030547 |
attgtgagaaccatacgacccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatctctttgaaattgctcat |
8030463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 5811063 - 5811177
Alignment:
| Q |
46 |
tgttagaaccatgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcatagtatgctttgacaaca |
145 |
Q |
| |
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|||||||| |||| ||| |||||||||||||| || ||||||||||||||||||| ||||| ||| ||| |||||| | ||||| || ||| ||| |
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| T |
5811063 |
tgttagaatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctgtttgaaattgcttgtagtaagccttgtggaca |
5811162 |
T |
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| Q |
146 |
tttgagggacttgtg |
160 |
Q |
| |
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|||||||| |||||| |
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| T |
5811163 |
tttgaggggcttgtg |
5811177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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