View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21574_low_18 (Length: 295)

Name: NF21574_low_18
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21574_low_18
NF21574_low_18
[»] chr4 (9 HSPs)
chr4 (103-275)||(14195357-14195530)
chr4 (103-275)||(43388725-43388898)
chr4 (1-107)||(43388936-43389042)
chr4 (1-104)||(14195568-14195671)
chr4 (1-94)||(43391375-43391468)
chr4 (103-231)||(43391505-43391634)
chr4 (152-201)||(33993568-33993617)
chr4 (154-215)||(53962333-53962395)
chr4 (160-207)||(50117367-50117414)
[»] chr2 (4 HSPs)
chr2 (119-216)||(38615301-38615399)
chr2 (154-215)||(38610292-38610354)
chr2 (160-200)||(23886513-23886553)
chr2 (160-224)||(24137041-24137106)
[»] chr1 (5 HSPs)
chr1 (154-215)||(49209275-49209337)
chr1 (103-200)||(51392625-51392720)
chr1 (162-216)||(19832615-19832670)
chr1 (160-275)||(19862390-19862508)
chr1 (240-275)||(14547174-14547209)
[»] chr7 (1 HSPs)
chr7 (154-207)||(46148994-46149047)
[»] chr3 (5 HSPs)
chr3 (160-215)||(49839917-49839973)
chr3 (154-215)||(3793890-3793952)
chr3 (109-173)||(3797880-3797944)
chr3 (240-275)||(16705141-16705176)
chr3 (162-215)||(16706446-16706500)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 103 - 275
Target Start/End: Complemental strand, 14195530 - 14195357
Alignment:
Q  103 aagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagt 202  Q
    ||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  14195530 aagcaagtgatagagatgagagaaaatcatatagagaaagtgtgtggtctattttgattgagtgtggagaggtgtatgtgctctcttgctgaggtggagt 14195431  T
Q  203 agatcaatccattattttaatcttaaggt-nnnnnnnngcatcttttactccctcatgtcatgagggacctatt 275  Q
    |||||||||||||||||||||| ||||||         ||||||||| ||||||||||||||||||||||||||    
T  14195430 agatcaatccattattttaatcctaaggtagaaaaaaagcatcttttgctccctcatgtcatgagggacctatt 14195357  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 103 - 275
Target Start/End: Complemental strand, 43388898 - 43388725
Alignment:
Q  103 aagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagt 202  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43388898 aagcaagtgatagaggtgagagaaaatcatatagagaaagtgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttgctgaggtggagt 43388799  T
Q  203 agatcaatccattattttaatcttaaggt-nnnnnnnngcatcttttactccctcatgtcatgagggacctatt 275  Q
    |||||||| |||| |||||||| ||||||         ||||||||| ||||| ||||||||||||||||||||    
T  43388798 agatcaattcattgttttaatcctaaggtaaaaaaaaagcatcttttgctcccacatgtcatgagggacctatt 43388725  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 43388936 - 43389042
Alignment:
Q  1 cattttacaacccagaaatcatatgaacacacagactgttatcttgccctcattctcacctcctttcctcaagatacttcactgttgcaatttaggcatg 100  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43388936 cattttacaacccagcaatcatatgcacacacagactgttatctcgccctcattctcacctcctttcctcaagatacttcactgttgcaatttaggcatg 43389035  T
Q  101 ggaagca 107  Q
    |||||||    
T  43389036 ggaagca 43389042  T

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Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14195568 - 14195671
Alignment:
Q  1 cattttacaacccagaaatcatatgaacacacagactgttatcttgccctcattctcacctcctttcctcaagatacttcactgttgcaatttaggcatg 100  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  14195568 cattttacaacccagaaatcatatgcacacacagactgctatcttgccctcattctcacctcctttcctcaagatacttcattgttgcaaattaggcatg 14195667  T
Q  101 ggaa 104  Q
    ||||    
T  14195668 ggaa 14195671  T

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Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 43391468 - 43391375
Alignment:
Q  1 cattttacaacccagaaatcatatgaacacacagactgttatcttgccctcattctcacctcctttcctcaagatacttcactgttgcaattta 94  Q
    |||||||||||||| |||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43391468 cattttacaacccataaatcatatgaatacagagactgttctcttgccctcgttctcacctcctttcctcaagatacttcactgttgcaattta 43391375  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 43391505 - 43391634
Alignment:
Q  103 aagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagt 202  Q
    ||||| |||||| ||| |||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||     
T  43391505 aagcaagtgatagaggggagagaaaatcatatgcagaaaatgtgtggtctattttgattgagtgtggagaagtacatgtgttctcttgttgaggtggagc 43391604  T
Q  203 agat-caatccattattttaatcttaaggt 231  Q
    |||| |||||||||  ||||||| ||||||    
T  43391605 agatccaatccatttatttaatcctaaggt 43391634  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 33993617 - 33993568
Alignment:
Q  152 tattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggag 201  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  33993617 tatttggattgagtgtggagaggtgcatgtgctctcttgatgaggtggag 33993568  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 53962395 - 53962333
Alignment:
Q  154 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 215  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||| ||||| ||||||||    
T  53962395 ttttgattgagtgtggagaggtacatgtgctctcttgctgagatggagcagatctaatccatt 53962333  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 50117367 - 50117414
Alignment:
Q  160 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc 207  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||    
T  50117367 ttgagtgtagagaggtgcatgtgctctcttgatgaggtggagcagatc 50117414  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 38615301 - 38615399
Alignment:
Q  119 tgagagaaaatcatatagagaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatta 216  Q
    ||||||||||||||||  | ||| |||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  38615301 tgagagaaaatcatatgtaaaaagtgtgtggtctgttttgattgagtatggagaggtgcatgtgctctcttgctgaggtggagcagatccaatccatta 38615399  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 38610354 - 38610292
Alignment:
Q  154 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 215  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  38610354 tttttattgagtgtggagaggtgcatgtgctctcttgctgaggtggagcagatccaatccatt 38610292  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 23886513 - 23886553
Alignment:
Q  160 ttgagtgtggagaggtgcatgtgctctcttggtgaggtgga 200  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23886513 ttgagtgtggagaggtgcatgtgctctcttgctgaggtgga 23886553  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 24137106 - 24137041
Alignment:
Q  160 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatc 224  Q
    ||||||||| ||||||| | ||||||||||| ||||||||||||||| | ||||||| ||||||||    
T  24137106 ttgagtgtgaagaggtgtaggtgctctcttgctgaggtggagtagatcctatccattgttttaatc 24137041  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 49209275 - 49209337
Alignment:
Q  154 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 215  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||    
T  49209275 ttttgattgagtgtggagaggtacatgtgctctcttgctgaggtggagcagatctaatccatt 49209337  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 51392625 - 51392720
Alignment:
Q  103 aagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtgga 200  Q
    ||||| |||||  ||| |||||||||||||||  |||   ||| ||||||  |||| ||||||||||||||||||||||||||||||| |||||||||    
T  51392625 aagcaagtgatgcaggggagagaaaatcatatgaagag--tgtctggtctgctttggttgagtgtggagaggtgcatgtgctctcttgctgaggtgga 51392720  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 19832670 - 19832615
Alignment:
Q  162 gagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatta 216  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||    
T  19832670 gagtgtggagaggtgtaggtgctctcttgctgaggtggagtagatccaatccatta 19832615  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 19862390 - 19862508
Alignment:
Q  160 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatcttaaggt--nnnnnnnngcatcttttactccctc 256  Q
    ||||||||||||||||| | ||||||||||| | ||||||||||||| |||||||||  ||| ||| ||||||          ||||||||| |||||||    
T  19862390 ttgagtgtggagaggtgtaggtgctctcttgcttaggtggagtagatccaatccattgctttgatcctaaggtaaaaaaaaaagcatcttttgctccctc 19862489  T
Q  257 atgtcatgagggacctatt 275  Q
    || ||||||||||||||||    
T  19862490 atatcatgagggacctatt 19862508  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14547209 - 14547174
Alignment:
Q  240 gcatcttttactccctcatgtcatgagggacctatt 275  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14547209 gcatcttttgctccctcatgtcatgagggacctatt 14547174  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 46149047 - 46148994
Alignment:
Q  154 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc 207  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  46149047 ttttggttgagtgtggagaggtgcatgtgctctcttgatgaggtggagcagatc 46148994  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 49839917 - 49839973
Alignment:
Q  160 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 215  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  49839917 ttgagtgtggagaggtgcatgtgctctcttgatgaggtggagcagatctaatccatt 49839973  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 3793952 - 3793890
Alignment:
Q  154 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 215  Q
    ||||||||||||||||||||||||||||||||||||| ||| || || ||||| |||||||||    
T  3793952 ttttgattgagtgtggagaggtgcatgtgctctcttgctgaagttgaatagatccaatccatt 3793890  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 3797880 - 3797944
Alignment:
Q  109 gtgataaaggtgagagaaaatcatatagagaaaatgtgtggtctattttgattgagtgtggagag 173  Q
    |||||| ||| ||||||||| ||| |  |||||||||||||| | ||||||||||||||||||||    
T  3797880 gtgatagaggggagagaaaagcatgtgcagaaaatgtgtggtttgttttgattgagtgtggagag 3797944  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 16705176 - 16705141
Alignment:
Q  240 gcatcttttactccctcatgtcatgagggacctatt 275  Q
    ||||||||| ||||||||||||||||||||||||||    
T  16705176 gcatcttttgctccctcatgtcatgagggacctatt 16705141  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 16706500 - 16706446
Alignment:
Q  162 gagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 215  Q
    ||||||||||||||| | ||||||||||| |||| |||||||||| |||||||||    
T  16706500 gagtgtggagaggtgtaggtgctctcttgctgagatggagtagatccaatccatt 16706446  T

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