View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21574_low_2 (Length: 504)
Name: NF21574_low_2
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 78 - 489
Target Start/End: Complemental strand, 36601980 - 36601565
Alignment:
| Q |
78 |
atactattatgtatatagctactttatttgtgtgaagtgtgagaacatggcattagatcctttcatgtagtaatcaaatgttagcgtaatcgttgttcgt |
177 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
36601980 |
atactattatgtgtatagctactttatttgggtgaagtgtgagaacatggcattagatcctttcatatagtaatcaaatgttagcgtaatggttgttcgt |
36601881 |
T |
|
| Q |
178 |
ttttgtggatttactctggtgttctttcttatgtgcaatgtagtgtgactggtttgaaagttgaaacaaccattttacttccgagtttgtgacagtaagt |
277 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36601880 |
ttctgtggatttactctggtgttctttcttatgtgcaatgtagtgtgactggtttgaaagttgaaacaaccattttacttccgagtttgtgacagtaagt |
36601781 |
T |
|
| Q |
278 |
gattgatggtatcattttatcaatttattatgaatgtctatggtttaaaatattatgaatgtttatag----taatatttagtatcaatcttgctgtgcc |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36601780 |
gattgatggtatcattttatcaatttattatgaatgtttatagtttaaaatattatgaatgtttatagtttataatatttagtatcaatcttgctgtgcc |
36601681 |
T |
|
| Q |
374 |
caccattggatttgtaaaaatatgaaagatctttgacatttgcctagtcttcaatgagcccagcaaattcaaaacagctgtcagtgttagtgaagccatg |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36601680 |
caccattggatttgtaaaaatatgaaagatctttgacatttgcctagtcttcaatgagcccagcaaattcaaaacagctgtcagtgttagtgaagccatg |
36601581 |
T |
|
| Q |
474 |
ggtggttgtttcatgt |
489 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36601580 |
ggtggttgtttcatgt |
36601565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University