View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_low_22 (Length: 211)
Name: NF21574_low_22
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30748256 - 30748159
Alignment:
| Q |
1 |
cttgatctctctgtttcttctcttcgtgaacgagtgagtgttagaggaacttgtcacacgcactatagaaaaagggaacaaaatattctagttacacc |
98 |
Q |
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| T |
30748256 |
cttgatctctctgtttcttctcttcgtgaacgagtgagtgttagaggaacttgtcacacgcactatagaaaaagggaacaaaatattctagttacacc |
30748159 |
T |
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Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 4190793 - 4190703
Alignment:
| Q |
95 |
caccacagttctagatagtacaccattctgcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg |
186 |
Q |
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| T |
4190793 |
caccacagttctagatagtacaccattctgcaaaccagcgtt-aggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg |
4190703 |
T |
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Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 52210331 - 52210241
Alignment:
| Q |
95 |
caccacagttctagatagtacaccattctgcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg |
186 |
Q |
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| T |
52210331 |
caccacagttctagatagtacaccattctgcaaaccagcgtt-aggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg |
52210241 |
T |
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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 47716977 - 47717068
Alignment:
| Q |
95 |
caccacagttctagatagtacaccattctgcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg |
186 |
Q |
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| T |
47716977 |
caccacagttctagacaagacaccattctgcaaaccagcattaaggaaaaggctagcaggatgatctgcaccatcctcaccaccaacagatg |
47717068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 47857106 - 47857015
Alignment:
| Q |
95 |
caccacagttctagatagtacaccattctgcaaaccagcgttcaggaaaaggctagcggggtgatctgccccatcctcaccgccaacagatg |
186 |
Q |
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| T |
47857106 |
caccacagttctagacaagacaccactctgcaaaccagcacttaggaaaaggctagcaggatgatctgcaccatcctcaccaccaacagatg |
47857015 |
T |
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