View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_low_3 (Length: 455)
Name: NF21574_low_3
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_low_3 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 249 - 438
Target Start/End: Complemental strand, 7138474 - 7138284
Alignment:
| Q |
249 |
gctaatttttactcctaacatatcaattattaaatttgaacgtaccacaaattcaaataatgttttgattctatatactcttgcatactt-aattcctta |
347 |
Q |
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| T |
7138474 |
gctaatttttactcctaacatattaattattaaatttgaaactaccacaaattcaaataatgttttgattctatatactcttgcatactttaattcctta |
7138375 |
T |
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| Q |
348 |
aaatttgcaaactacgtacctaaacgaattacgaattgtgtgtctataatcacaatcatggtttagtttgaaggtcacaaagtgtagagtt |
438 |
Q |
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| T |
7138374 |
aaatttgcaaactacgtacctaaacgaattacgaattgtgtgtctataatcacaatcatagtttagtttgaaggtcacaaagtgtagagtt |
7138284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 7138624 - 7138550
Alignment:
| Q |
56 |
agggtgttgtgctcacctaggggaagcaaggtatcattggtcccaccatttccatcgctataccaatgtacatca |
130 |
Q |
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| T |
7138624 |
agggtgtggtgctcacctagggaaagcaaggtatcattggtcccaccatttccattgctatcccaatgcacatca |
7138550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 7138546 - 7138487
Alignment:
| Q |
200 |
gtatatatatttgacaaagcacacttgc--tatatctatgttaggctgttagctaatttt |
257 |
Q |
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| T |
7138546 |
gtatatatatttgacaaaccacacttgctttatctctatgttaggctgttagctaatttt |
7138487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 17295 - 17239
Alignment:
| Q |
180 |
atgtgggactagcatgtacagtatatatatttgacaaagcacacttgctatatctatgttag |
241 |
Q |
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| T |
17295 |
atgtgggactagcat-----gtatatatatttgacaaacaacacttgctatatctctgttag |
17239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 2165129 - 2165170
Alignment:
| Q |
200 |
gtatatatatttgacaaagcacacttgctatatctatgttag |
241 |
Q |
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| T |
2165129 |
gtatatatatttgacaaacaacacttgctatatctctgttag |
2165170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 2176762 - 2176803
Alignment:
| Q |
200 |
gtatatatatttgacaaagcacacttgctatatctatgttag |
241 |
Q |
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| T |
2176762 |
gtatatatatttgacaaacaacacttgctatatctctgttag |
2176803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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