View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_low_5 (Length: 435)
Name: NF21574_low_5
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Original strand, 6535018 - 6535421
Alignment:
| Q |
10 |
agatgaatatttgaggatggtatttgcttgcactctactccctccataatgaaatgtaaacaaaaagttaatgcatttgtactaagtttttaacattctt |
109 |
Q |
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| T |
6535018 |
agatgaatatttgaggatggtaattgcttgcactctactccctccataatgaaatgtaaacaaaaagttaatgcatttgtactaagtttttaacattctt |
6535117 |
T |
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| Q |
110 |
ctaccacttttcttaatatttcattttacagggagtatgttcaagctagtatagaagagagtgaggaggtatcaagtcgaatgagttgtgtaccttgcat |
209 |
Q |
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| T |
6535118 |
ctaccactttcgttaatatttcattttacagggagtatgttcaagctagtatagaagagagtgaggaggtatcaagtcgaatgagttgtgtaccttgcat |
6535217 |
T |
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| Q |
210 |
tatggtgaatgataatttttataggcatcgtgaaggagctgttagagagtgatggagtggtcattacgtacggtgccttgttaattttggatctagtggt |
309 |
Q |
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| T |
6535218 |
tatggtgaatgataatttttataggcatcgtgaaggagctgttagagagtgatggagtggtcattacgtacggtgccttgttaattttggacctagtggt |
6535317 |
T |
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| Q |
310 |
cgttgagaagtgttatcagtcgttggactaattgaatttatagtgaagtttggtaaaattaacggttaaactaacttaaaaatataatcgtataattaat |
409 |
Q |
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| T |
6535318 |
cgttgagaagtgttatcagttgatggactaattgaatttatagtgaagtttggtaaaattaacggttaaactaacttaaaaatataatcgtataattaat |
6535417 |
T |
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| Q |
410 |
attt |
413 |
Q |
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| T |
6535418 |
attt |
6535421 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 39033685 - 39033648
Alignment:
| Q |
357 |
gtttggtaaaattaacggttaaactaacttaaaaatat |
394 |
Q |
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| T |
39033685 |
gtttgataaaattatcggttaaactaacttaaaaatat |
39033648 |
T |
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