View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21574_low_6 (Length: 423)
Name: NF21574_low_6
Description: NF21574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21574_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 32313288 - 32313694
Alignment:
| Q |
1 |
aaacttgatgttgagctaactgtggaagagaggaatcttctctcagtgggatataaaaatgtcattggtgcaaggagagcctcgtggcgcattatgtctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313288 |
aaacttgatgttgagctaactgtggaagagaggaatcttctctcggtgggatataaaaatgtcattggtgcaaggagagcctcgtggcgcattatgtctt |
32313387 |
T |
|
| Q |
101 |
caattgaacagaaagaagaggctaagggaaatgagaacaacgtgaaactgatcaagagttattgccaaaaggttgaggaggaactatcgaaaatttgcag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313388 |
caattgaacagaaagaagaggctaagggaaatgagaacaacgtgaaactgatcaagagctattgccaaaaggttgaggaggaactatcgaaaatttgcag |
32313487 |
T |
|
| Q |
201 |
cgacattctcgaaattattgacaaacatctgattccttcttccaccacaggggaagctactgttttctactacaagatgtgagtcataatgttttacttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313488 |
cgacattctcgaaattattgacaaacatctgattccttcttccaccacaggggaagctactgttttctactacaagatgtgagtcataatgttttacttg |
32313587 |
T |
|
| Q |
301 |
agccattttcttggttagtttaataactgtctgctgttgaaaatttgttttcgaatggactaaaattgcttgttccgttttttgtaaatggattttaatg |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32313588 |
tgccattttcttggtcagtttaataactgtctgctgttgaaaatttgttttcgaatggactaaaattgcttgttccattttttgtaaatggattttaatg |
32313687 |
T |
|
| Q |
401 |
ctgtaag |
407 |
Q |
| |
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||||||| |
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| T |
32313688 |
ctgtaag |
32313694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 19414684 - 19414971
Alignment:
| Q |
1 |
aaacttgatgttgagctaactgtggaagagaggaatcttctctcagtgggatataaaaatgtcattggtgcaaggagagcctcgtggcgcattatgtctt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| |||||||||||| | ||||| || |||||||||||||| | |
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| T |
19414684 |
aaacttgatgttgaactaactgtggaagagaggaacctcctctcagttggatataaaaacgtcattggtgcacgaagagcttcatggcgcattatgtcct |
19414783 |
T |
|
| Q |
101 |
caattgaacagaaagaagaggctaagggaaatgagaacaacgtgaaactgatcaagagttattgccaaaaggttgaggaggaactatcgaaaatttgcag |
200 |
Q |
| |
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||||||| |||||||| ||| ||||||| ||||| |||| || ||| ||||||||||||| ||||||||||||||||||||||| || ||||| || | |
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|
| T |
19414784 |
caattgagcagaaagaggagtctaagggtaatgaacacaatgttaaaatgatcaagagttactgccaaaaggttgaggaggaactctccaaaatctgtgg |
19414883 |
T |
|
| Q |
201 |
cgacattctcgaaattattgacaaacatctgattccttcttccaccacaggggaagctactgttttctactacaagatgtgagtcata |
288 |
Q |
| |
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|||||||| |||||||||| | |||||| ||||| |||||||| | | ||||||| ||||||||| | ||||||||||||||| |
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| T |
19414884 |
tgacattctgacaattattgaccagcatctggttcctgcttccacctcggcagaagctaatgttttctatcataagatgtgagtcata |
19414971 |
T |
|
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