View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_high_10 (Length: 289)
Name: NF21575_high_10
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 4009533 - 4009262
Alignment:
| Q |
18 |
aaacatgacgaatgaacaaggagaagttgtacaaaagaaagctagattggtaatttaaggttgcagtcaacaaggtattgattacagtaaaacctttgct |
117 |
Q |
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| T |
4009533 |
aaacatgacgaatgaacaaggagaagttgtacaaaagaaagctagattggtaatttaaggttgcagtcaacaaggtattgattacattaaaacctttgct |
4009434 |
T |
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| Q |
118 |
ccaatttcaatgtttaaaagtcatatgaatttcactttaatttgttgttaaccacaataaaattatgttagaaaaacaactagtaacataagatggaaga |
217 |
Q |
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| T |
4009433 |
ccaatttcaatgtttaaaagtcatatgaatttcactttaatttgttgttaaccacaataaaattatgttagaaaaacaactagtaacataagatggaaga |
4009334 |
T |
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| Q |
218 |
aacgtaaacatagacattaaacatgaccgatctttgttcgcgcagtttggtaaatagagaaatttatagctc |
289 |
Q |
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| T |
4009333 |
aacgtaaacatagacattaaatatgaccgatctttgttcgcgcagtttggtaaatggagaaatttatagctc |
4009262 |
T |
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