View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21575_high_12 (Length: 268)

Name: NF21575_high_12
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21575_high_12
NF21575_high_12
[»] chr3 (2 HSPs)
chr3 (52-178)||(4607839-4607965)
chr3 (62-177)||(27682613-27682728)
[»] chr2 (5 HSPs)
chr2 (50-177)||(1016131-1016258)
chr2 (61-172)||(17304870-17304981)
chr2 (61-124)||(45033778-45033841)
chr2 (203-258)||(25306522-25306577)
chr2 (62-177)||(41602864-41602979)
[»] chr8 (3 HSPs)
chr8 (50-177)||(1173872-1173999)
chr8 (66-180)||(35674411-35674525)
chr8 (83-177)||(13857142-13857236)
[»] chr4 (2 HSPs)
chr4 (61-177)||(11810913-11811028)
chr4 (78-177)||(25053262-25053361)
[»] chr7 (1 HSPs)
chr7 (50-144)||(29925040-29925134)
[»] chr5 (2 HSPs)
chr5 (61-177)||(25503116-25503232)
chr5 (50-124)||(10411205-10411279)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 4607839 - 4607965
Alignment:
Q  52 gaaaacaacgattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaag 151  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||| ||| |||||||| |||||| ||||||    
T  4607839 gaaaacaccgattcctgattcggagttgatcgtttctgtcaaatcaacgaattcgaacaatcccaaatccgagttcatagtttctgtagccgcgatcaag 4607938  T
Q  152 aattcgaagcatctcatcatcaataca 178  Q
    |||||||||||||||||||||| ||||    
T  4607939 aattcgaagcatctcatcatcactaca 4607965  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 27682613 - 27682728
Alignment:
Q  62 attcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaagc 161  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||| ||||||||   ||||| | |||||||    
T  27682613 attcttgattcagagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgagttccatgtttttgaagccgtgttcaagcaatcgaagc 27682712  T
Q  162 atctcatcatcaatac 177  Q
    ||||||||||| ||||    
T  27682713 atctcatcatcgatac 27682728  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 1016131 - 1016258
Alignment:
Q  50 cagaaaacaacgattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatca 149  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||   ||||||||||| ||| |||    
T  1016131 cagaaaacaccgatttttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgatttccatgtttctgaagcagcattca 1016230  T
Q  150 agaattcgaagcatctcatcatcaatac 177  Q
    || | |||||||||||||||||| ||||    
T  1016231 agcaatcgaagcatctcatcatcgatac 1016258  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 17304870 - 17304981
Alignment:
Q  61 gattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaag 160  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||   ||||||||||||||  ||||| | |||| |    
T  17304870 gattcttgattcggagttgatcgtttctggcaaatcaacgaattcgaacaatcgtgaatctgagttccatgtttctgaagccgcgttcaagcaatcgatg 17304969  T
Q  161 catctcatcatc 172  Q
    ||||||||||||    
T  17304970 catctcatcatc 17304981  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 45033778 - 45033841
Alignment:
Q  61 gattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgag 124  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45033778 gattcttgaatcagagttgatcgtttctgccaaatcaacgaattcgaacaatcgtgaatctgag 45033841  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 25306522 - 25306577
Alignment:
Q  203 cagcaaggcgtgggcttcatcttcagtcttgctgggcttcaatatggtttcctatg 258  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  25306522 cagcaaggcgtgggctaaatcatcagtcttgctgggcttcaatatggtttcctatg 25306577  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 41602864 - 41602979
Alignment:
Q  62 attcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaagc 161  Q
    |||||||||| | |||| | |||||||||||||||  |||| ||||   || |||| |||||| ||| | ||| |||||| || ||||||||||||||||    
T  41602864 attcttgatttgaagttcaccgtttctgccaaatccgcgaaatcgacacattgcgactctgagttcatactttttgaagctgcgatcaagaattcgaagc 41602963  T
Q  162 atctcatcatcaatac 177  Q
    ||||||||||| ||||    
T  41602964 atctcatcatcgatac 41602979  T

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Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 1173872 - 1173999
Alignment:
Q  50 cagaaaacaacgattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatca 149  Q
    |||||||||  ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||| ||   |||| |||||||||  |||    
T  1173872 cagaaaacacagattcttgattcaaagttgatcgtttcttccaaatcaacgaattcgaacaatcgcgaatctgagttccatgtttttgaagccgcgttca 1173971  T
Q  150 agaattcgaagcatctcatcatcaatac 177  Q
    || | |||||||||||||||||||||||    
T  1173972 agcaatcgaagcatctcatcatcaatac 1173999  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 35674525 - 35674411
Alignment:
Q  66 ttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaagcatct 165  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||  ||| |||||| ||||||||| ||||| ||| ||||||||||| ||||||||    
T  35674525 ttgattcgaagttgatcgtttctgccaaatccatgaattcgaacaattacgactctgagttcacagtttttgaagtcgcgatcaagaattccaagcatct 35674426  T
Q  166 catcatcaatacagt 180  Q
    ||||||  |||||||    
T  35674425 catcattgatacagt 35674411  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 13857142 - 13857236
Alignment:
Q  83 gtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaagcatctcatcatcaatac 177  Q
    |||||||||||||| |  |||||||  |||||||| |||||| |||||||||||||| |||| |||| ||||| |||||||||||||||| ||||    
T  13857142 gtttctgccaaatccaaaaattcgacaaatcgcgactctgagttcacagtttctgaacccgcgatcaggaatttgaagcatctcatcatcgatac 13857236  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 11811028 - 11810913
Alignment:
Q  61 gattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaag 160  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||   |||| |||||||||  ||||| | ||||||    
T  11811028 gattcttgattcagagttgatc-tttctgccaaatcaacgaattcgaacaatcgcgaatctgagttccatgtttttgaagccgcgttcaagcaatcgaag 11810930  T
Q  161 catctcatcatcaatac 177  Q
    |||||||||||| ||||    
T  11810929 catctcatcatcgatac 11810913  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 25053262 - 25053361
Alignment:
Q  78 tgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaagcatctcatcatcaatac 177  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||| ||   ||||||||||| |  | |||||| |||| | ||||||||||| ||||    
T  25053262 tgatcgtttttgccaaatcaacgatttcgaacaatcgcgaatctgagttccaggtttctgaagctgagaccaagaactcgacgaatctcatcatcgatac 25053361  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 29925040 - 29925134
Alignment:
Q  50 cagaaaacaacgattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgc 144  Q
    ||||||||| | |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||   ||||||||||||||    
T  29925040 cagaaaacaccaattcttgattcggagttgatggtttctgcaaaatcaatgaattcgaacaatcgcgaatctgagttccatgtttctgaagccgc 29925134  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 25503232 - 25503116
Alignment:
Q  61 gattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgaggtcacagtttctgaagccgcaatcaagaattcgaag 160  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||||||||| || ||||||||| ||    ||||||||||||   ||||| | || |||    
T  25503232 gattcttgattcagagttgattgtttctgccaaatcaacaaattcgaacaaccgtgaatctgagttccatatttctgaagccgagttcaagcaatcaaag 25503133  T
Q  161 catctcatcatcaatac 177  Q
    |||||||||||| ||||    
T  25503132 catctcatcatcgatac 25503116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 10411205 - 10411279
Alignment:
Q  50 cagaaaacaacgattcttgattcggagttgatcgtttctgccaaatcaacgaattcgaacaatcgcgaatctgag 124  Q
    |||||||||  ||||||||| || ||| |||||||||||||||||||||||| || ||||||||| |||||||||    
T  10411205 cagaaaacacagattcttgagtcagagatgatcgtttctgccaaatcaacgattttgaacaatcgtgaatctgag 10411279  T

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