View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21575_high_14 (Length: 263)

Name: NF21575_high_14
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21575_high_14
NF21575_high_14
[»] chr2 (2 HSPs)
chr2 (1-155)||(40963753-40963907)
chr2 (186-245)||(40963938-40963997)
[»] chr4 (2 HSPs)
chr4 (1-59)||(22799329-22799387)
chr4 (12-62)||(19591938-19591987)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 40963753 - 40963907
Alignment:
Q  1 atgtgtctttaacagattttgatttgtcatgtttaacatcttgcaagccacaggtatcttaggcaagaaaattagataacgtggttttagcaatatttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40963753 atgtgtctttaacagattttgatttgtcatgtttaacatcttgcaagccacaggtatcttaggcaagaaaattagataacgtggttttagcaatatttta 40963852  T
Q  101 actaagaccactgaacagtttcactatgcagcttataattccagctaatgaggat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40963853 actaagaccactgaacagtttcactatgcagcttataattccagctaatgaggat 40963907  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 40963938 - 40963997
Alignment:
Q  186 ggacaacagaaaactcaacaaattccaacgtttatggcggaaccaatgagagcgtccaat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40963938 ggacaacagaaaactcaacaaattccaacgtttatggcggaaccaatgagagcgtccaat 40963997  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22799329 - 22799387
Alignment:
Q  1 atgtgtctttaacagattttgatttgtcatgtttaacatcttgcaagccacaggtatct 59  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  22799329 atgtgtctctaacagattttgatttgtcctgtttaacatcttgcaaaccacaggtatct 22799387  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 19591938 - 19591987
Alignment:
Q  12 acagattttgatttgtcatgtttaacatcttgcaagccacaggtatcttag 62  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||| ||||    
T  19591938 acagatttt-atttggcatgtttaacatcttgcaaaccacaggtattttag 19591987  T

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