View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_high_15 (Length: 255)
Name: NF21575_high_15
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 32919907 - 32919666
Alignment:
| Q |
1 |
ttgccctagtagccccctatggttgtgtgtttgttgccacagatatgtgtttagattggcaccagaagcactttttagaatgtcttcatctagtctagat |
100 |
Q |
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| T |
32919907 |
ttgccctagtagccccctatggttgtgtgtttgttgccacagatatgtgtttagattggcaccagaagcactttttagaatgtcttcatctagtctagat |
32919808 |
T |
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| Q |
101 |
tcagactcttcaaatggatcttcctctcgagcagtatactcaaaaccgttgtgccccttttgtgggatactgctacagagaaaacaacctgattttctac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32919807 |
tcagactcttcaaatggatcttcctctcgagcagtatcctcaaaaccgttgtgccccttttgtgggatactgctacagagaaaacaacctgattttctac |
32919708 |
T |
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| Q |
201 |
tttccactgcacctgtataagactgttgaactattatttatt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
32919707 |
tttccactgcacctgtataagactgttgaactattatttatt |
32919666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 38466604 - 38466387
Alignment:
| Q |
5 |
cctagtagccccctatggttgtgtgtttgttgccacagatatgtgtt---tagattggcaccagaagcactttttagaatgtcttcatctagtctagatt |
101 |
Q |
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||||||| ||| |||||||| ||||| ||||| || || | |||||| ||| ||||| || ||| ||||||||||||||||||||| | || |||||| |
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| T |
38466604 |
cctagtaccccgctatggttttgtgtatgttgtcataggtttgtgttaattaggttggcgccggaaccactttttagaatgtcttcattttgtatagatt |
38466505 |
T |
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| Q |
102 |
cagactcttcaaatggatcttcctctcgagcagtatactcaaaaccgttgtgccccttttgtgggatactgctacagagaaaacaacctgattttctact |
201 |
Q |
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||||||||||||| ||||||| || ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38466504 |
cagactcttcaaacagatcttc---tcaagcagtaccctcaaaaccgctgtgtcccttttgtgggatactgctacagagaaaacaaccagattttctact |
38466408 |
T |
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| Q |
202 |
ttccactgcacctgtataaga |
222 |
Q |
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| T |
38466407 |
ttcttcctcacctgtataaga |
38466387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 21774089 - 21774301
Alignment:
| Q |
17 |
ctatggttgtgtgtttgttgccacagatatgtgtttagattggcaccagaagcactttttagaatgtcttcatctagtctagattcagactcttcaaatg |
116 |
Q |
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|||||||| ||||| ||||| || || | ||||||||| ||||| || ||| ||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
21774089 |
ctatggttttgtgtatgttgtcataggtttgtgtttaggttggcgccggaaccactttttagaatgtcttcattttgtatagattcagactcttcaaata |
21774188 |
T |
|
| Q |
117 |
gatcttcctctcgagcagtatactcaaaaccgttgtgccccttttgtgggatactgctacagagaaaacaacctgattttctactttccactgcacctgt |
216 |
Q |
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| T |
21774189 |
gttcttc---tcaagcagtttcctcaaaaccgctgtgtcccttctgtgggatactgctacagagaaaacagccagactttctactttcttcctcacctgt |
21774285 |
T |
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| Q |
217 |
ataagactgttgaact |
232 |
Q |
| |
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|||||| | ||||||| |
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| T |
21774286 |
ataagaatattgaact |
21774301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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