View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_high_17 (Length: 237)
Name: NF21575_high_17
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8349545 - 8349325
Alignment:
| Q |
1 |
ttctattcataatatctatatcactcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaa |
100 |
Q |
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| T |
8349545 |
ttctattcataatatctatatcactcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaa |
8349446 |
T |
|
| Q |
101 |
acttatcttacgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8349445 |
acttatcttacgaaacaagagcattcaataagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcat |
8349346 |
T |
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| Q |
201 |
gacagttggttagcaaacaag |
221 |
Q |
| |
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|||| |||||||| ||||||| |
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| T |
8349345 |
gacaattggttagtaaacaag |
8349325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 11993792 - 11993954
Alignment:
| Q |
59 |
taaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaa |
158 |
Q |
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|||||||||||||||||||| ||| ||||| || |||||| |||||| ||| |||||||||||| ||||| || |||||| |||| |||| | |
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| T |
11993792 |
taaatcacttgaactaatgtttttggaagatagtttttttaaacttctcttacaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtaca |
11993890 |
T |
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| Q |
159 |
aaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttgg-ttagcaaacaag |
221 |
Q |
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| T |
11993891 |
agatggaaggttggtagtggagagaatatccgggtgttttatgacaattggtttagcaaacaag |
11993954 |
T |
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