View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_low_1 (Length: 670)
Name: NF21575_low_1
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 201 - 501
Target Start/End: Original strand, 43657573 - 43657873
Alignment:
| Q |
201 |
aagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgagttccattcgaaagtctcgataatgctaggcttgtgtacaa |
300 |
Q |
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| T |
43657573 |
aagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtgcaa |
43657672 |
T |
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| Q |
301 |
aaaatggagttccttaattaccattgctaaagtccttcaaaagaaaaaagaatatagatatcaaaatctatggttttttgtctttggtacctgcttgtaa |
400 |
Q |
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| T |
43657673 |
aaaatggagttccttgattaccattgctaaagtccttcaaaagaaaaaagaatatagatatcaaaatctatggttttttgtctttggtacctgcttgtaa |
43657772 |
T |
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| Q |
401 |
tttcattcacaatcctgcctgctcatacagtgatgttaacataatacatgcacttcatatatctcgcaatcaatggcataatatccatgccaattttctc |
500 |
Q |
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| T |
43657773 |
ttgcactcacaatcctgcctgctcatacagtgatgttaacataatacatgcacttcatatatctcgcaatcaatggcataatatccatgccgattttctc |
43657872 |
T |
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| Q |
501 |
a |
501 |
Q |
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| T |
43657873 |
a |
43657873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 43657501 - 43657552
Alignment:
| Q |
147 |
gcttcttcaaatgtggctttggggtgaaggagaggttttggaatatacaaca |
198 |
Q |
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| T |
43657501 |
gcttcttctcatgtggctttggggtgaaggagaggttttggaatagacaaca |
43657552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 218 - 315
Target Start/End: Original strand, 10367374 - 10367471
Alignment:
| Q |
218 |
tttcttcttcccaatgatattcttgaaatgtgtttggatcgagttccattcgaaagtctcgataatgctaggcttgtgtacaaaaaatggagttcctt |
315 |
Q |
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| T |
10367374 |
tttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaatgttaggcttgtttgcaagaattggagttcctt |
10367471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 315
Target Start/End: Original strand, 10378882 - 10378996
Alignment:
| Q |
201 |
aagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgagttccattcgaaagtctcgataatgctaggcttgtgtacaa |
300 |
Q |
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||||| |||||||||| ||||||||||| |||| ||||||||| |||||||| || | ||||||| ||||||||| | |||| |||||||| | ||| |
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| T |
10378882 |
aagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaa |
10378981 |
T |
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| Q |
301 |
aaaatggagttcctt |
315 |
Q |
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| T |
10378982 |
gaattggagttcctt |
10378996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 10371031 - 10371120
Alignment:
| Q |
231 |
atgatattcttgaaatgtgtttggatcgagttccattcgaaagtctcgataatgctaggcttgtgtacaaaaaatggagttccttaattac |
321 |
Q |
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| T |
10371031 |
atgatattcttcaaatgtgtttgggtggt-ttccactcaaaagttcctagaatgctaggctcgtgttcaaataatggagttccttaattac |
10371120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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