View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_low_10 (Length: 343)
Name: NF21575_low_10
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 44799806 - 44799682
Alignment:
| Q |
23 |
cttaaatttctatgaagaactttatgaaggcttccatatggtaaatattcataaaccaaaaccagttcattcccttcacaacactgtcctttaagctgaa |
122 |
Q |
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| T |
44799806 |
cttaaattcctatgcagaactttatcaaggcttccatttggtagatactcataaaccaaaaccaattcattcccttcacaacaccaccctttaagctgaa |
44799707 |
T |
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| Q |
123 |
ccagattcttgtgccgcaagcaacc |
147 |
Q |
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| T |
44799706 |
ccagattcttgtgccgcaagcaacc |
44799682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 8349969 - 8350079
Alignment:
| Q |
221 |
gttgattacactcttcttgat-aagtagcagatgtaaattaatactacaagactgcaagcgcgagggataatagttaacagggaaataagaaactacaat |
319 |
Q |
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| T |
8349969 |
gttgattacactcttgataattaagtagcagatgtaaattaacattgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataat |
8350068 |
T |
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| Q |
320 |
cggagctccct |
330 |
Q |
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| T |
8350069 |
tggagctccct |
8350079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 8349624 - 8349669
Alignment:
| Q |
112 |
tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa |
157 |
Q |
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| T |
8349624 |
tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa |
8349669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 8260574 - 8260644
Alignment:
| Q |
257 |
attaatactacaagactgcaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctc |
327 |
Q |
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| T |
8260574 |
attaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc |
8260644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 8352758 - 8352803
Alignment:
| Q |
283 |
agggataatagttaacagggaaataagaaactacaatcggagctcc |
328 |
Q |
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| T |
8352758 |
agggataatagttaacagggaaataagaaactacaattgaagctcc |
8352803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 8334034 - 8334078
Alignment:
| Q |
284 |
gggataatagttaacagggaaataagaaactacaatcggagctcc |
328 |
Q |
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| T |
8334034 |
gggataatagttaacgaggaaataagaaactacaattggaactcc |
8334078 |
T |
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