View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_low_11 (Length: 324)
Name: NF21575_low_11
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 11737576 - 11737300
Alignment:
| Q |
15 |
agatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagattaggtagcatgtattgaattgaactaaaattatttgtatcgaaatataaacgcag |
114 |
Q |
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| T |
11737576 |
agatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagattaggtagcatgtattgaattgaactaaaattatatgtatcgaaatataaacgcag |
11737477 |
T |
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| Q |
115 |
ttctttttatttcgactcagataaagacacctcataataacatgtatcacttacttgaatttgtttagaaaaataatccacaatgtttgagatcaatgca |
214 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
11737476 |
ttctttttatttcggctcagataaagacacctcataataacatgtatcacttacttgaatttgtttagaaaaatattccacaatatttgagatcaatgca |
11737377 |
T |
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| Q |
215 |
tgggaatcttcctttcccaccttagtaataacatcagcaatatcattttgaccaatatcaagaatgaagattgattt |
291 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11737376 |
tgggaatcttcctttcccaccttactaataacatcagcaatatcattttgaccaatatcaagaatgaagattgattt |
11737300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 11741718 - 11741590
Alignment:
| Q |
157 |
tgtatcacttacttgaatttgtttagaaaaataatccacaatgtttgagatcaatgcatgggaatcttcctttcccaccttagtaataacatcagcaata |
256 |
Q |
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||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||| | |
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| T |
11741718 |
tgtatcacttacttgaacttgttttgcaaaatattccacaatgtttgagatcaatgcttgtgaatcttcctttcccaccttactaataacatcaccaaga |
11741619 |
T |
|
| Q |
257 |
tcattttgaccaatatcaagaatgaagat |
285 |
Q |
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| T |
11741618 |
tcattttgaccaatatcaagcatgtagat |
11741590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 32052661 - 32052699
Alignment:
| Q |
15 |
agatgaagtggcgcgcaagaaaggctcaatgaaaatagt |
53 |
Q |
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| T |
32052661 |
agatgaagtggcgcgcaagaaagactcaatgagaatagt |
32052699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 54239223 - 54239268
Alignment:
| Q |
15 |
agatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagatt |
60 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
54239223 |
agatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtagatt |
54239268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 9295034 - 9295079
Alignment:
| Q |
15 |
agatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagatt |
60 |
Q |
| |
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||||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
9295034 |
agatgaagtggtgcgtaagaaatgctcaatgaaaatagtgtagatt |
9295079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 14503754 - 14503799
Alignment:
| Q |
15 |
agatgaagtggcgcgcaagaaaggctcaatgaaaatagtgtagatt |
60 |
Q |
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|||| ||||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
14503754 |
agataaagtggcgcgcaagaaaggttcaataaaaatagtgcagatt |
14503799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 45085361 - 45085397
Alignment:
| Q |
15 |
agatgaagtggcgcgcaagaaaggctcaatgaaaata |
51 |
Q |
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|||||||||| ||||||||||||||||||||| |||| |
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| T |
45085361 |
agatgaagtgtcgcgcaagaaaggctcaatgagaata |
45085397 |
T |
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