View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_low_13 (Length: 285)
Name: NF21575_low_13
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 48093032 - 48092767
Alignment:
| Q |
10 |
gttacgttaccatatgcttggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttaaaccaatttcattgttgagtt |
109 |
Q |
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| T |
48093032 |
gttacgttaccatatgcttggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttgaaccaatttcattgttgagtt |
48092933 |
T |
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| Q |
110 |
gttggattatttgaataagttgtggattgaacaaagctgctgcacgttgtagctcaactgagcatcccccatttgtgcctcgttgtgctaattctgctgg |
209 |
Q |
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| T |
48092932 |
gttggattatttgaataagttgtggattgaacaaagctgctgcacgttgtagctcaactgagcatcccccatttgtgcctcgttgtgctaattctgctgg |
48092833 |
T |
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| Q |
210 |
aacacaaccaattggacctgttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
275 |
Q |
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| T |
48092832 |
aacacaaccaattggacctgttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
48092767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 13324783 - 13324929
Alignment:
| Q |
15 |
gttaccatatgcttggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttaaaccaatttcattgttgagttgttgg |
114 |
Q |
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| T |
13324783 |
gttaccatatgcttgaggattattgacgaagtcaagggccatttgccttgtgttggctcccatgaatacatttgaaccaatttcattgttgagttcttga |
13324882 |
T |
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| Q |
115 |
attatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
161 |
Q |
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| T |
13324883 |
attatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
13324929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 5666656 - 5666802
Alignment:
| Q |
15 |
gttaccatatgcttggggattattgacgaagtcaagggccatctgccttgtgttagctcccatgaatacatttaaaccaatttcattgttgagttgttgg |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
5666656 |
gttaccatatgcttgaggattattgacgaagtcaagggccatttgccttgtgttggctcccatgaatacatttgaaccaatttcattgttgagttcttga |
5666755 |
T |
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| Q |
115 |
attatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
161 |
Q |
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| T |
5666756 |
attatttgaataagttgtggattgaacaaagctgctgcacgttgtag |
5666802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 35354416 - 35354495
Alignment:
| Q |
196 |
gctaattctgctggaacacaaccaattggacctgttcctgtcactatcaccctacgtgctccaagatcgtatagtctctg |
275 |
Q |
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|||||| |||||||| ||||||| |||||||||||||||| ||| | ||||||||||||||||||| ||||||||||| |
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| T |
35354416 |
gctaatgctgctggagcacaacccattggacctgttcctgacaccagaaccctacgtgctccaagatgatatagtctctg |
35354495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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