View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21575_low_2 (Length: 544)

Name: NF21575_low_2
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21575_low_2
NF21575_low_2
[»] chr6 (3 HSPs)
chr6 (18-329)||(31938874-31939200)
chr6 (360-501)||(31939293-31939433)
chr6 (35-173)||(13535529-13535667)
[»] chr5 (3 HSPs)
chr5 (18-329)||(9389227-9389554)
chr5 (360-498)||(9389662-9389806)
chr5 (21-168)||(19810089-19810237)
[»] chr7 (3 HSPs)
chr7 (18-193)||(1337043-1337220)
chr7 (224-329)||(1337269-1337374)
chr7 (360-476)||(1337481-1337596)
[»] chr4 (1 HSPs)
chr4 (21-179)||(5639137-5639295)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 31938874 - 31939200
Alignment:
Q  18 catctaaaggacaggctagacaacttgggtacttaaaagggagagttgtcaaaggactgtcatcagagagtccttgaattgctaaaccaaatgtgtatcc 117  Q
    ||||||||| |  |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  31938874 catctaaagaatgggctagacaacttgggtacttaaaggggagaattgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcc 31938973  T
Q  118 aagggcaagggccacaggaacagcaactgcatttccaacttgcatgtacctgcattaaagatgg-aacgattgagtgttatg------------atagga 204  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||| ||||||||| |||            || | |    
T  31938974 aagggcaagggccacaggaacagcaactgcgtttccaacttgaatatacctgcattaaagatggaaactattgagtgtcatgctatacataataatggaa 31939073  T
Q  205 aaaaatattatatttaaag--agaacatgttactaactaaactcaaactataacaactttaatcttttacatgtagcaatctttgtaaccatattgttag 302  Q
    ||||| |||||| | ||||  |||| |||| ||||||||| ||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||||||||    
T  31939074 aaaaaaattataatgaaagatagaatatgtcactaactaatctcaaactataactactttagtcttctacatttagcaatctttctaaccatattgttag 31939173  T
Q  303 accaatcagaaatattacacctaaaaa 329  Q
    |||||| ||||||||||||||||||||    
T  31939174 accaataagaaatattacacctaaaaa 31939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 360 - 501
Target Start/End: Original strand, 31939293 - 31939433
Alignment:
Q  360 gaaggaacagattccaacctcaaaatggaaaggaagactgaacattcagccatccttgtctctaaatacttcatacgataaaatattgtgtattatctta 459  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31939293 gaaggaacagattccaatctcaaaatggaagggaagactgaacattcagccatccttgtctctaaatacttcatatgataaaatattgtgtattatctta 31939392  T
Q  460 aataataaatatatgaaaatttgtagatacaaggctacagaa 501  Q
    ||| |||| |||||||||| |||| |||| ||||||||||||    
T  31939393 aatcataagtatatgaaaa-ttgtggatataaggctacagaa 31939433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 13535529 - 13535667
Alignment:
Q  35 agacaacttgggtacttaaaagggagagttgtcaaaggactgtcatcagagagtccttgaattgctaaaccaaatgtgtatccaagggcaagggccacag 134  Q
    |||||||||||||||||||| |||||||||||||||||  |||||||||| |||||| |||| || ||||| ||||||||||||||||||||||| || |    
T  13535529 agacaacttgggtacttaaatgggagagttgtcaaaggcttgtcatcagaaagtcctagaatagccaaacctaatgtgtatccaagggcaagggctaccg 13535628  T
Q  135 gaacagcaactgcatttccaacttgcatgtacctgcatt 173  Q
    ||||||| || ||||||||||||||  | ||||||||||    
T  13535629 gaacagcgaccgcatttccaacttgagtatacctgcatt 13535667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 9389227 - 9389554
Alignment:
Q  18 catctaaaggacaggctagacaacttgggtacttaaaagggagagttgtcaaaggactgtcatcagagagtccttgaattgctaaaccaaatgtgtatcc 117  Q
    ||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  9389227 catctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcc 9389326  T
Q  118 aagggcaagggccacaggaacagcaactgcatttccaacttgcatgtacctgcattaaagatggaacgattgagtg---------------ttatgatag 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||               | |||  |     
T  9389327 aagggcaagggccacaggaacagcaactgcgtttccaacttgcatgtacctgcattaaagatgaaactattgagtgccatgcaatacataataatgggaa 9389426  T
Q  203 gaaaaaatattatatttaaag--agaacatgttactaactaaactcaaactataacaactttaatcttttacatgtagcaatctttgtaaccatattgtt 300  Q
    ||||||| | |||| | ||||  |||| |||||||||||||| ||| |  |||||| | |||| |||| ||||| ||||||||||| |||||||| ||||    
T  9389427 gaaaaaaaaatataatgaaagatagaaaatgttactaactaatctc-acttataactagtttagtcttctacatttagcaatctttctaaccataatgtt 9389525  T
Q  301 agaccaatcagaaatattacacctaaaaa 329  Q
    |||||||| ||||||||||||||||||||    
T  9389526 agaccaataagaaatattacacctaaaaa 9389554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 360 - 498
Target Start/End: Original strand, 9389662 - 9389806
Alignment:
Q  360 gaaggaacagattccaacctcaaaatggaaaggaagactgaacattcagccatccttgtctctaaatacttcatacgataaaatattgtgtattatctta 459  Q
    ||||||||||||||| | |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  9389662 gaaggaacagattcctatctcaaaatggaagggaaggctgaacattcagtcatccttgtctctaaatacttcatatgataatatattgtgtattatctta 9389761  T
Q  460 aataataaata------tatgaaaatttgtagatacaaggctaca 498  Q
    ||| ||| |||      | ||||||||||| ||||||||||||||    
T  9389762 aatcatagataaaatattgtgaaaatttgtggatacaaggctaca 9389806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 19810237 - 19810089
Alignment:
Q  21 ctaaaggacaggctagacaacttgggtacttaaaagggagagttgtcaaaggactgtcatcagagagtccttgaattg-ctaaaccaaatgtgtatccaa 119  Q
    ||||||||| ||||||||| | ||| ||||||||  ||||||| ||||| |   |||| ||| ||||||||||||| | |||| || ||||||| ||| |    
T  19810237 ctaaaggacgggctagacagcatggctacttaaacaggagagtcgtcaacgacttgtcgtcaaagagtccttgaataggctaatcctaatgtgtgtccga 19810138  T
Q  120 gggcaagggccacaggaacagcaactgcatttccaacttgcatgtacct 168  Q
    || |||||||||  ||||||| ||| ||||||||||||| |||||||||    
T  19810137 ggtcaagggccattggaacagtaaccgcatttccaacttacatgtacct 19810089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 1337043 - 1337220
Alignment:
Q  18 catctaaaggacaggctagacaacttgggtacttaaaagggagagttgtcaaaggactgtcatcagagagtccttgaattgctaaaccaaatgtgtatcc 117  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||| ||||| ||||||| ||||| |||||||||||    
T  1337043 catctaaaggacgggctagacaactagggtacttaaaggggagagttgtcaaaggaccgtcatcggagtgtcctagaattgccaaacctaatgtgtatcc 1337142  T
Q  118 aagggcaagggccacaggaacagcaactgcatttccaacttgcatgtacctg--cattaaagatggaacgattgagtg 193  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  1337143 aagggcaagggcaacaggaacagcaactgcgtttccaacttgcatgtacctgcacattaaagatggaactattgagtg 1337220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 224 - 329
Target Start/End: Original strand, 1337269 - 1337374
Alignment:
Q  224 agaacatgttactaactaaactcaaactataacaactttaatcttttacatgtagcaatctttgtaaccatattgttagaccaatcagaaatattacacc 323  Q
    |||| |||||||| ||||||||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||| |||| ||||| ||||||||||||||    
T  1337269 agaaaatgttactgactaaactcaaactataactactttagtcttctacatttagcaatctttctaaccatattattagtccaataagaaatattacacc 1337368  T
Q  324 taaaaa 329  Q
    ||||||    
T  1337369 taaaaa 1337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 360 - 476
Target Start/End: Original strand, 1337481 - 1337596
Alignment:
Q  360 gaaggaacagattccaacctcaaaatggaaaggaagactgaacattcagccatccttgtctctaaatacttcatacgataaaatat--tgtgtattatct 457  Q
    ||||||||| |||||||  ||||||||||| |||||||||||||||||||| ||||||||| |||  |||||||   |||||||||  ||||||||||||    
T  1337481 gaaggaacatattccaatttcaaaatggaa-ggaagactgaacattcagccgtccttgtctttaa--acttcatgtcataaaatattgtgtgtattatct 1337577  T
Q  458 taaataataaatatatgaa 476  Q
    ||||| |||||||||||||    
T  1337578 taaatcataaatatatgaa 1337596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 5639137 - 5639295
Alignment:
Q  21 ctaaaggacaggctagacaacttgggtacttaaaagggagagttgtcaaaggactgtcatcagagagtccttgaattgctaaaccaaatgtgtatccaag 120  Q
    ||||||||| ||| ||||||||||| |||||||| |||||||||||||||||| ||||  ||||| ||||||||| ||||||||| ||||||||||| ||    
T  5639137 ctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaagtgctaaacccaatgtgtatccgag 5639236  T
Q  121 ggcaagggccacaggaacagcaactgcatttccaacttgcatgtacctgcattaaagat 179  Q
    ||||||  |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  5639237 ggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagat 5639295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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