View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_low_20 (Length: 213)
Name: NF21575_low_20
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 45389511 - 45389691
Alignment:
| Q |
15 |
atatcatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45389511 |
atattatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
45389610 |
T |
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| Q |
115 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagag |
195 |
Q |
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| T |
45389611 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatcacttcaatatcttatgaaatagag |
45389691 |
T |
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Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 45374353 - 45374533
Alignment:
| Q |
15 |
atatcatttgtaaatattagtttcagagctgacatatgttgcgttttacaatcatgctattctaaatacagagatacacacataatagtctaattaaaag |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||| || |||||||||||||||| ||||| |
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| T |
45374353 |
atatcatttgtaaatattagcttcagagctgacatatgttgtgttttacaatcattctattctaaatatagagctatgcacataatagtctaataaaaag |
45374452 |
T |
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| Q |
115 |
catagagctcaaatggatatttttaacatcattcttgtttaatacttcttactcatctcttcaatatcttatgaaatagag |
195 |
Q |
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||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
45374453 |
catagtgctcaaatggatatttttaacatccttcatgtttaatacttcttactcattatttcaatatcctatgaaatagag |
45374533 |
T |
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