View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_low_3 (Length: 487)
Name: NF21575_low_3
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 6 - 469
Target Start/End: Original strand, 55738566 - 55739029
Alignment:
| Q |
6 |
aggagcacagatgacattcccggatggggaacttttttccatggccttgttggtgatggaagtgtcagtgtaagtactacatgtatctctcttttgtctt |
105 |
Q |
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| T |
55738566 |
aggatcacagatgacattcccggatggggaacttttttccatggccttgttggtgatggaagtgtcagtgtaagtactacatgtatctctcttttgtctt |
55738665 |
T |
|
| Q |
106 |
cagattgaagtcttgtctggtgtccgatatgtgctagtgtttaagagttgagacataatctatattacaaactagtgctaatgtcatgtttgttaatcaa |
205 |
Q |
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| T |
55738666 |
cagattgaagtcgtgtctggtgtccgatatgtgctagtgtttaagagttgagacataatctatattacaaactagtgctaatgtcatgtttgttaatcaa |
55738765 |
T |
|
| Q |
206 |
ttaaactttgtcattttttcataatataggttatggtggctgtattattgttcataataccgaacagaaaacaagagggtgagaggctaatggattggaa |
305 |
Q |
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| T |
55738766 |
ttaaactttgtcattttttcataatataggttatggtggctgtattattgttcataataccgaacagaaaacaagagggtgagaggctaatggattggaa |
55738865 |
T |
|
| Q |
306 |
tgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttct |
405 |
Q |
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| T |
55738866 |
tgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttct |
55738965 |
T |
|
| Q |
406 |
aaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataa |
469 |
Q |
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| T |
55738966 |
aaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataa |
55739029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 244 - 464
Target Start/End: Original strand, 9380791 - 9381011
Alignment:
| Q |
244 |
gctgtattattgttcataataccgaacagaaaacaagagggtgagaggctaatggattggaatgaatgcaagaaactaccttggaacctaattttgttac |
343 |
Q |
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| T |
9380791 |
gctgtcttattattcataatcccaaacatgaagcaaaatggggagaagctaatggactggaatgaatgcaaaaagttaccatggaacctaattttgcttc |
9380890 |
T |
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| Q |
344 |
ttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttctaaagctttagatttcttagaagatgccccatatttggc |
443 |
Q |
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| T |
9380891 |
taggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtcaaaagccttagaattcttaaaagatgttccatacttagc |
9380990 |
T |
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| Q |
444 |
aattgctcctgcagttagtct |
464 |
Q |
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| T |
9380991 |
aattgttcctgctgttagtct |
9381011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 9379667 - 9379735
Alignment:
| Q |
13 |
cagatgacattcccggatggggaacttttttccatggccttgttggtgatggaagtgtcagtgtaagta |
81 |
Q |
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| T |
9379667 |
cagatgacttacctggatggggagttttgttccatggccttgttggtgatggaagcatcagtgtaagta |
9379735 |
T |
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