View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21575_low_4 (Length: 433)

Name: NF21575_low_4
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21575_low_4
NF21575_low_4
[»] chr7 (3 HSPs)
chr7 (1-412)||(28216822-28217242)
chr7 (1-412)||(28237694-28238098)
chr7 (1-412)||(28232865-28233286)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 28216822 - 28217242
Alignment:
Q  1 cagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaaagcagagcg-----------ccacaagc 89  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||           ||||||||    
T  28216822 cagttcgtctcggcggttgctttcatgtcccaatacagattgaaattggtccgtaatcaccttccgaagtaaagcacagcgaaggttgtatgccacaagc 28216921  T
Q  90 atatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacctattccatcgaaactcctgt 189  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||| |||||    
T  28216922 atctcactagccttttccaacccagactccttcacctcctgcacat-ttttgtgaagcttagattgctgtccacaaaacccattccatcaaaacacctgt 28217020  T
Q  190 cccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaatctttttcctagataaaggaagaaccaccttagaattgcatgc 289  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  28217021 cccacagcgatgctttttcagtctcttccattgggacacacgtcttctccttcttaatctttttcctaggtaaaggaagaaccaccttagaatcgcatgc 28217120  T
Q  290 agcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagttccccccaccttttctcttgagctt 389  Q
    |||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28217121 agcggaatcattgttc-aaaggtggtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagtttcccccaccttttctcttgagctt 28217219  T
Q  390 gcagattgtaacaccactaacgt 412  Q
    |||||||||||||||||||||||    
T  28217220 gcagattgtaacaccactaacgt 28217242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 28237694 - 28238098
Alignment:
Q  1 cagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaaagcagagcg-----------ccacaagc 89  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||    
T  28237694 cagttcgtcttggcagttgctttcatgtcctagtacagattgaaattggtccataatcaccttcccaagtaaagcagagcgaaggttgtacgccacaagc 28237793  T
Q  90 atatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacctattccatcgaaactcctgt 189  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| || ||||  |    
T  28237794 atctcactagctttttccaacccagactccttcacctcctgcacatcttttgcgaagcatagatttctgtccacaaaatccattccatcaaacctcccat 28237893  T
Q  190 cccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaatctttttcctagataaaggaagaaccaccttagaattgcatgc 289  Q
    ||| |||||||||                ||||||||||| || ||||||||||||||| ||||||||| | ||||||||||  ||||||||| ||||||    
T  28237894 cccacagcgatgc----------------attgggacacaagt-ttctccttcttaatccttttcctaggtgaaggaagaacagccttagaatcgcatgc 28237976  T
Q  290 agcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagttccccccaccttttctcttgagctt 389  Q
    ||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  28237977 agcggcctcattgttcaaa-ggttgtgcagcaataggttctgcgtctgaaagtgacggtgacccctcctttgagtttcccccaccttttctcttgagctt 28238075  T
Q  390 gcagattgtaacaccactaacgt 412  Q
    |||||||| ||||||||||||||    
T  28238076 gcagattgcaacaccactaacgt 28238098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 28232865 - 28233286
Alignment:
Q  1 cagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaaagcagagcg-----------ccacaagc 89  Q
    |||||||||| ||| |||||| | |||||||| || || ||| ||||||||| ||||||||||||||||||||||||||||           |||||||     
T  28232865 cagttcgtcttggcagttgctatgatgtcccactaaagcttggaattggtccgtaatcaccttcccaagtaaagcagagcgaaggctgtacgccacaaga 28232964  T
Q  90 atatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacctattccatcgaaactcctgt 189  Q
    || |||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  28232965 atctcaccagctttttccaacccagactccttcacctcctgcacgtcttttgtgaagcttagattgctgtccacaaaacccattccatcgaacctcctgt 28233064  T
Q  190 cccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaatctttttcctagataaaggaagaaccaccttagaattgcatgc 289  Q
    ||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||||| | ||| ||||||||||||||||   |||||    
T  28233065 cccacagcgatgctatatcagtcccttccattgggacacaagtcttctccttcttaatccttttcctaggtgaagaaagaaccaccttagaaccacatgc 28233164  T
Q  290 agcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctgagttccccccaccttttctcttgagctt 389  Q
    ||| |||   |||||| ||| || ||||||||||||||||| |||||||||||||||||| ||| | || |||| | || ||||||||||| ||||| ||    
T  28233165 agctgccatgttgttc-aaacgtggtgcagcaataggttctttgtctgaaagtgacggtggcccattctttgagcttccgccaccttttcttttgagttt 28233263  T
Q  390 gcagattgtaacaccactaacgt 412  Q
    || ||||||||||| ||||||||    
T  28233264 gcggattgtaacactactaacgt 28233286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University