View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21575_low_5 (Length: 429)

Name: NF21575_low_5
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21575_low_5
NF21575_low_5
[»] chr8 (5 HSPs)
chr8 (1-422)||(4008838-4009262)
chr8 (152-229)||(38404396-38404475)
chr8 (356-404)||(12319100-12319148)
chr8 (151-228)||(43239725-43239804)
chr8 (353-404)||(3635631-3635682)
[»] scaffold0110 (1 HSPs)
scaffold0110 (156-224)||(7645-7715)
[»] chr5 (7 HSPs)
chr5 (152-223)||(3081279-3081352)
chr5 (152-221)||(15399878-15399949)
chr5 (152-223)||(6491245-6491318)
chr5 (151-221)||(2679832-2679904)
chr5 (156-220)||(344100-344164)
chr5 (152-188)||(28154788-28154824)
chr5 (152-188)||(29709608-29709644)
[»] chr4 (8 HSPs)
chr4 (152-223)||(46669892-46669965)
chr4 (152-222)||(8828157-8828229)
chr4 (152-220)||(40423020-40423090)
chr4 (152-223)||(49936563-49936636)
chr4 (355-409)||(52636631-52636685)
chr4 (152-221)||(32648951-32649022)
chr4 (152-221)||(42954671-42954742)
chr4 (151-228)||(55509933-55510012)
[»] chr1 (6 HSPs)
chr1 (152-223)||(43036270-43036343)
chr1 (152-223)||(41432709-41432782)
chr1 (152-189)||(1071069-1071106)
chr1 (152-228)||(51303122-51303201)
chr1 (152-188)||(34552035-34552071)
chr1 (152-188)||(34918689-34918725)
[»] chr6 (3 HSPs)
chr6 (152-220)||(33677088-33677157)
chr6 (156-228)||(15615723-15615793)
chr6 (151-228)||(33590275-33590354)
[»] scaffold0991 (1 HSPs)
scaffold0991 (254-296)||(3234-3276)
[»] chr7 (4 HSPs)
chr7 (152-223)||(1277999-1278072)
chr7 (346-407)||(32650527-32650589)
chr7 (152-222)||(38679961-38680031)
chr7 (152-221)||(22556651-22556719)
[»] chr3 (3 HSPs)
chr3 (152-223)||(39114911-39114984)
chr3 (154-220)||(40674171-40674239)
chr3 (151-228)||(49183741-49183820)
[»] chr2 (1 HSPs)
chr2 (153-219)||(44953968-44954036)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 4009262 - 4008838
Alignment:
Q  1 ccattttatttatgtaataaattagggttttagtattacagtcaatatatagcactacgatagagattacaacaataacctttaaccgtagctcatcttg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4009262 ccattttatttatgtaatgaattagggttttagtattacagtcaatatatagcactacgatagagattacaacaataacctttaaccgtagctcatcttg 4009163  T
Q  101 ttaggtaaatggagaaatctttcacatattttcaaatggagattacaacgatatgattaatatattttttattgtaaggatattataatcacagattaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4009162 ttaggtaaatggagaaatctttcacatattttcaaatggagattacaacgatatgattaatatattttttattgtaaggatattataatcacagattaat 4009063  T
Q  201 tttaaagaattcatataaaccctacaaac---nnnnnnnnnnnnnnnnnaacacaatttttaagttccccaaatgaggaagattttgtgttaagaaaaac 297  Q
    |||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4009062 tttaaagaattcatataaaccctacaaacccttctcctcctcctcctccaacacaatttttaagttccccaaatgaggaagattttgtgttaagaaaaac 4008963  T
Q  298 aaacccttcgagacccttccttctcaatttccttaannnnnnncccatttgctcattcttttttccaaaaatctctcatctctttccctccaaactcgta 397  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4008962 aaacccttcgagacccttccttctcaatttccttaatttttttcccatttgctcattcttttttccaaaaatctctcatctctttccctccaaactcgta 4008863  T
Q  398 aacaaagtctaaaatagtattatct 422  Q
    |||||||||||||||||||||||||    
T  4008862 aacaaagtctaaaatagtattatct 4008838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 38404475 - 38404396
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatc--acagattaattttaaagaattcatataaaccctacaaac 229  Q
    |||||||||||||||||||||| |||| ||||||||| |  | | ||||||||| ||||||||||||||||||| |||||    
T  38404475 tatgattaatatattttttattttaagaatattataaccatataaattaattttgaagaattcatataaacccttcaaac 38404396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 12319100 - 12319148
Alignment:
Q  356 ttttttccaaaaatctctcatctctttccctccaaactcgtaaacaaag 404  Q
    |||||| ||||| ||||||||||||| ||||||||||||| ||||||||    
T  12319100 tttttttcaaaattctctcatctcttcccctccaaactcgcaaacaaag 12319148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 43239804 - 43239725
Alignment:
Q  151 atatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaaccctacaaa 228  Q
    ||||||||| ||||||||||||| |||  ||||||||  | || ||||||| ||| ||||||||||||||||||| ||||    
T  43239804 atatgattactatattttttattttaaaaatattatatcaacatagattaaatttgaagaattcatataaacccttcaaa 43239725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 3635631 - 3635682
Alignment:
Q  353 ttcttttttccaaaaatctctcatctctttccctccaaactcgtaaacaaag 404  Q
    |||||||||||||||  |||||||| ||| ||||||||||||| ||||||||    
T  3635631 ttcttttttccaaaaccctctcatcccttcccctccaaactcgcaaacaaag 3635682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 7645 - 7715
Alignment:
Q  156 attaatatattttttattgtaaggatattataatcac--agattaattttaaagaattcatataaacccta 224  Q
    |||||||||||||||||| || | ||||||||| |||  |||||||||||||| |||||||||||| ||||    
T  7645 attaatatattttttattttatgaatattataaccacgtagattaattttaaaaaattcatataaatccta 7715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 3081279 - 3081352
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaaccct 223  Q
    |||||||||||||||||| ||| |||| ||||||||  | || | ||||| |||||||||||||||||||||||    
T  3081279 tatgattaatatatttttaattttaagaatattataagaacatatattaaatttaaagaattcatataaaccct 3081352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 15399949 - 15399878
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatcaca--gattaattttaaagaattcatataaacc 221  Q
    |||||||||||||||||| ||| |||  |||||||||  |||  |||||| |||||||||||||||||||||    
T  15399949 tatgattaatatatttttaattttaaaaatattataacaacaaagattaaatttaaagaattcatataaacc 15399878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 6491318 - 6491245
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatcacaga--ttaattttaaagaattcatataaaccct 223  Q
    |||||||||||||||||| ||| |||| |||||||||  ||| |  |||| ||| |||||||||||||||||||    
T  6491318 tatgattaatatatttttaattttaagaatattataacaacataagttaaatttgaagaattcatataaaccct 6491245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 2679832 - 2679904
Alignment:
Q  151 atatgattaatatattttttattgtaaggatattataatcaca--gattaattttaaagaattcatataaacc 221  Q
    ||||||||| ||||||||| ||| |||  |||||||||  |||  |||||| |||||||||||||||||||||    
T  2679832 atatgattactatatttttaattttaaaaatattataacaacatagattaaatttaaagaattcatataaacc 2679904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 344164 - 344100
Alignment:
Q  156 attaatatattttttattgtaaggatattataatcacagattaattttaaagaattcatataaac 220  Q
    |||||| ||||||| ||| |||| || ||||||  ||| ||||| ||||||||||||||||||||    
T  344164 attaatgtatttttaattttaagaatgttataaaaacatattaaatttaaagaattcatataaac 344100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 28154824 - 28154788
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataa 188  Q
    |||||||||||||||||||||| |||| |||||||||    
T  28154824 tatgattaatatattttttattttaagaatattataa 28154788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 29709644 - 29709608
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataa 188  Q
    |||||||||||||||||||||| |||| |||||||||    
T  29709644 tatgattaatatattttttattttaagaatattataa 29709608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 46669892 - 46669965
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaaccct 223  Q
    |||||||||||||||||| ||| |||| ||||||||  | || | ||||| |||||||||||||||||||||||    
T  46669892 tatgattaatatatttttaattttaagaatattataacaacatatattaaatttaaagaattcatataaaccct 46669965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 8828157 - 8828229
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatcaca--gattaattttaaagaattcatataaaccc 222  Q
    |||||||||||||||||||| | |||  |||||||||  |||  |||||| ||||||||||||||||||||||    
T  8828157 tatgattaatatattttttaatttaaaaatattataacaacaaagattaaatttaaagaattcatataaaccc 8828229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 40423020 - 40423090
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaac 220  Q
    |||||||||||||||||| ||| |||| ||||||||  | || ||||||| ||| ||||||||||||||||    
T  40423020 tatgattaatatatttttaattttaagaatattataacaacatagattaaatttgaagaattcatataaac 40423090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 49936636 - 49936563
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaaccct 223  Q
    |||||||||||||||||| ||| |||| ||||||||  | || ||||| | ||| |||||||||||||||||||    
T  49936636 tatgattaatatatttttaattttaagaatattataacaacatagattgaatttgaagaattcatataaaccct 49936563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 52636685 - 52636631
Alignment:
Q  355 cttttttccaaaaatctctcatctctttccctccaaactcgtaaacaaagtctaa 409  Q
    ||||||||||||| |||| |||| ||| ||||||||||||| |||||||| ||||    
T  52636685 cttttttccaaaattctcccatcccttcccctccaaactcgcaaacaaagcctaa 52636631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 32648951 - 32649022
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaacc 221  Q
    |||||||||||||||||| ||| |||| ||||||||  | || ||||||| ||| || ||||||||||||||    
T  32648951 tatgattaatatatttttaattttaagaatattataacaacatagattaaatttgaaaaattcatataaacc 32649022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 42954742 - 42954671
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataat--cacagattaattttaaagaattcatataaacc 221  Q
    |||||||||||||||||| ||| |||| ||||||||||  || | ||||| ||| ||||||||| |||||||    
T  42954742 tatgattaatatatttttgattttaagaatattataataacatacattaaatttgaagaattcacataaacc 42954671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 55510012 - 55509933
Alignment:
Q  151 atatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaaccctacaaa 228  Q
    ||||||||  ||||||||||||| |||  ||||||||  | || ||||||| ||| ||||||||||||||||||| ||||    
T  55510012 atatgattgctatattttttattttaaaaatattatagcaacatagattaaatttgaagaattcatataaaccctccaaa 55509933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 43036270 - 43036343
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaaccct 223  Q
    |||||||||||||||||| ||| |||| ||||||||  | || ||||||| ||| |||||||||||||||||||    
T  43036270 tatgattaatatatttttaattttaagaatattataacaacatagattaaatttgaagaattcatataaaccct 43036343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 41432709 - 41432782
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataa--tcacagattaattttaaagaattcatataaaccct 223  Q
    |||||||||||||||||| ||| |||| |||||||||   || ||||||| ||| |||||||||| ||||||||    
T  41432709 tatgattaatatatttttaattttaagaatattataactacatagattaaatttgaagaattcatgtaaaccct 41432782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 1071106 - 1071069
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataat 189  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  1071106 tatgattaatatatttttaattttaaggatattataat 1071069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 51303122 - 51303201
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatcaca---gattaattttaaagaattcatataaaccctacaaa 228  Q
    |||||||||||||||||||||  |||| ||||||||| ||||   ||| | |||| ||||||||||||||| ||| ||||    
T  51303122 tatgattaatatattttttatgttaagaatattataaccacataggatcatttttgaagaattcatataaatcctccaaa 51303201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 34552035 - 34552071
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataa 188  Q
    |||||||||||||||||||||| |||| |||||||||    
T  34552035 tatgattaatatattttttattttaagaatattataa 34552071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 34918689 - 34918725
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataa 188  Q
    |||||||||||||||||||||| |||| |||||||||    
T  34918689 tatgattaatatattttttattttaagaatattataa 34918725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 33677157 - 33677088
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatcaca-gattaattttaaagaattcatataaac 220  Q
    |||||||||||||||||| ||| |||| |||||||||  |||  ||||| ||||||||||||||||||||    
T  33677157 tatgattaatatatttttaattttaagaatattataacaacacaattaaatttaaagaattcatataaac 33677088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 15615793 - 15615723
Alignment:
Q  156 attaatatattttttattgtaaggatattataatcacagattaattttaaagaattcatataaaccctacaaa 228  Q
    |||||||||||||| ||| |||  ||||||||| || ||||||| ||| ||||||||||||||||||| ||||    
T  15615793 attaatatatttttaattttaaa-atattataa-caaagattaaatttgaagaattcatataaaccctccaaa 15615723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 33590275 - 33590354
Alignment:
Q  151 atatgattaatatattttttattgtaaggatattataatcaca--gattaattttaaagaattcatataaaccctacaaa 228  Q
    ||||||||| ||||||||| ||| |||  |||||||||| |||  |||||| ||| |||||||||||| |||||| ||||    
T  33590275 atatgattactatatttttaattttaaaaatattataataacatagattaaatttgaagaattcatattaaccctccaaa 33590354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 3276 - 3234
Alignment:
Q  254 tttttaagttccccaaatgaggaagattttgtgttaagaaaaa 296  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||    
T  3276 tttttaagttccccaaatgaggaggattttgtattatgaaaaa 3234  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 1278072 - 1277999
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaaccct 223  Q
    |||||||||||||||||| ||| |||| ||||||||  | || | ||||| ||| |||||||||||||||||||    
T  1278072 tatgattaatatatttttaattttaagaatattataacaacatatattaaatttgaagaattcatataaaccct 1277999  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 32650527 - 32650589
Alignment:
Q  346 ttgctcattctttttt-ccaaaaatctctcatctctttccctccaaactcgtaaacaaagtct 407  Q
    |||||||||||||||| || ||| | |||| |||||| ||||||||||||| |||||||||||    
T  32650527 ttgctcattctttttttcccaaactttctcctctcttcccctccaaactcgcaaacaaagtct 32650589  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 38679961 - 38680031
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatcacagattaattttaaagaattcatataaaccc 222  Q
    |||||||||||||||||| ||| |||| ||||||| |  ||| ||||  ||| ||||||||||||||||||    
T  38679961 tatgattaatatatttttaattttaagaatattatgacgacatattatatttgaagaattcatataaaccc 38680031  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 22556651 - 22556719
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataatcacagattaattttaaagaattcatataaacc 221  Q
    |||||||||||||||||| ||| |||| ||||||||| || | ||||| |||||| |||||||| |||||    
T  22556651 tatgattaatatatttttaattttaagaatattataa-catatattaaatttaaaaaattcatagaaacc 22556719  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 39114911 - 39114984
Alignment:
Q  152 tatgattaatatattttttattgtaaggatattataat--cacagattaattttaaagaattcatataaaccct 223  Q
    ||||||||||||| |||| ||| |||| ||||||||||  || ||||| | ||| |||||||||||||||||||    
T  39114911 tatgattaatataattttaattttaagaatattataataacatagattgaatttgaagaattcatataaaccct 39114984  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 40674239 - 40674171
Alignment:
Q  154 tgattaatatattttttattgtaaggatattata--atcacagattaattttaaagaattcatataaac 220  Q
    |||||||||||||||| ||| |||| ||||||||  | || | ||||| ||||||||||||||||||||    
T  40674239 tgattaatatatttttaattttaagaatattataacaacatatattaaatttaaagaattcatataaac 40674171  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 49183820 - 49183741
Alignment:
Q  151 atatgattaatatattttttattgtaaggatattataatcaca--gattaattttaaagaattcatataaaccctacaaa 228  Q
    ||||||||| ||||||||||||| |||  ||| |||||  |||  |||||| ||| ||||||||||||||||||| ||||    
T  49183820 atatgattactatattttttattttaaaaataatataacaacatagattaaatttgaagaattcatataaaccctccaaa 49183741  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 44953968 - 44954036
Alignment:
Q  153 atgattaatatattttttattgtaaggatattataat--cacagattaattttaaagaattcatataaa 219  Q
    ||||||||||||||||| ||| |||| ||||||||||  || | ||||| ||||||||| |||||||||    
T  44953968 atgattaatatatttttaattttaagaatattataataacatatattaaatttaaagaactcatataaa 44954036  T

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