View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21575_low_7 (Length: 398)
Name: NF21575_low_7
Description: NF21575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21575_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 5453841 - 5453474
Alignment:
| Q |
13 |
aaaataagcacaatgacacaaaaagctatgaagttaaaacaatatcatatttcacacacaaattggatactcagagtataactctacatcctctgattcc |
112 |
Q |
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| T |
5453841 |
aaaataagcacaatgacacaaaaagctatgaagttaaaacaatatcatatttcacacacaaattggatactcagagtataactctacatcctctgattcc |
5453742 |
T |
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| Q |
113 |
accaatttctaaacaatgcagataaaacgaaaattagcaaaatcagaatcaaaccataacagtaataccaattctttaacaagcaaaccctaaaatgcta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5453741 |
accaatttctaaacaatgcagataaaacgaaaattagcaacatcagaatcaaaccataacagtaataccaattatttaacaagcaaaccctaaaatgcta |
5453642 |
T |
|
| Q |
213 |
aatataaccggtagatcaatcaagactcaaaacagcaactgcgtctacggcggaggaaggagttccgacggaggtgttaccgtcatcagcgagacgagat |
312 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5453641 |
aatataaccagtagatcaatcaagactcaaaacagcaactgcgtctgcggcggaggaaggagttccgacggaggtgttaccgtcatcagcgagacgagat |
5453542 |
T |
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| Q |
313 |
ttagctttaacagtctcgatcatgcgcttactgatctccttcgagtaaacctcaagaatcgtaacgtt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5453541 |
ttagctttaacagtctcgatcatgcgcttactgatctccttcgagtaaacctcaagaatcgtaacgtt |
5453474 |
T |
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