View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21576_low_1 (Length: 603)

Name: NF21576_low_1
Description: NF21576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21576_low_1
NF21576_low_1
[»] chr6 (3 HSPs)
chr6 (442-596)||(92308-92462)
chr6 (445-515)||(10895582-10895652)
chr6 (441-493)||(30797691-30797743)
[»] chr4 (8 HSPs)
chr4 (442-580)||(55403334-55403474)
chr4 (341-442)||(54745741-54745842)
chr4 (341-442)||(54762468-54762569)
chr4 (341-442)||(54769922-54770023)
chr4 (19-109)||(54746460-54746550)
chr4 (19-109)||(54763187-54763277)
chr4 (19-109)||(54770641-54770731)
chr4 (439-515)||(22460462-22460538)
[»] chr7 (3 HSPs)
chr7 (442-561)||(37125553-37125672)
chr7 (473-546)||(17264880-17264953)
chr7 (442-490)||(11033487-11033535)
[»] chr2 (4 HSPs)
chr2 (442-583)||(43326101-43326242)
chr2 (442-516)||(4009254-4009328)
chr2 (439-548)||(36620159-36620268)
chr2 (442-511)||(29522579-29522648)
[»] chr1 (5 HSPs)
chr1 (443-559)||(12307880-12307996)
chr1 (18-91)||(52096428-52096502)
chr1 (442-517)||(5733161-5733236)
chr1 (442-546)||(51285246-51285350)
chr1 (442-516)||(19659733-19659806)
[»] scaffold0026 (1 HSPs)
scaffold0026 (435-548)||(91551-91664)
[»] scaffold1342 (1 HSPs)
scaffold1342 (442-516)||(1227-1301)
[»] chr5 (2 HSPs)
chr5 (442-512)||(3805677-3805747)
chr5 (442-493)||(22775942-22775993)
[»] chr8 (2 HSPs)
chr8 (446-548)||(30253394-30253496)
chr8 (441-486)||(21468244-21468289)
[»] chr3 (1 HSPs)
chr3 (444-490)||(18478411-18478457)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 442 - 596
Target Start/End: Original strand, 92308 - 92462
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||    
T  92308 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaacca 92407  T
Q  542 tgccattgacccactctctcccactcccactctctcattcgttttcttcttctca 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92408 tgccattgacccactctctcccactcccactctctcattcgttttcttcttctca 92462  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 445 - 515
Target Start/End: Complemental strand, 10895652 - 10895582
Alignment:
Q  445 tggcggagccacatggggacaggg-tatggccatggcctacccattaattctgtgaaattactataataccc 515  Q
    ||||||||||||||| |||| ||| |||| |||||||||||||||| |||||||||||  ||||||||||||    
T  10895652 tggcggagccacatgaggactggggtatg-ccatggcctacccatttattctgtgaaaagactataataccc 10895582  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 30797691 - 30797743
Alignment:
Q  441 acagtggcggagccacatggggacagggtatggccatggcctacccattaatt 493  Q
    |||| |||||||| || |||||||||||  ||||||||| |||||||||||||    
T  30797691 acaggggcggagcgacttggggacaggggctggccatggtctacccattaatt 30797743  T

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Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 442 - 580
Target Start/End: Original strand, 55403334 - 55403474
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 541  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  55403334 cagtggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 55403433  T
Q  542 tgccattgacccactctctccc--actcccactctctcatt 580  Q
    ||||||||||||||||||||||  |||||| ||||||||||    
T  55403434 tgccattgacccactctctcccagactcccgctctctcatt 55403474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 341 - 442
Target Start/End: Complemental strand, 54745842 - 54745741
Alignment:
Q  341 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54745842 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54745743  T
Q  441 ac 442  Q
    ||    
T  54745742 ac 54745741  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 341 - 442
Target Start/End: Complemental strand, 54762569 - 54762468
Alignment:
Q  341 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54762569 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54762470  T
Q  441 ac 442  Q
    ||    
T  54762469 ac 54762468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 341 - 442
Target Start/End: Complemental strand, 54770023 - 54769922
Alignment:
Q  341 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcactaccattcacctttagag 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54770023 ttaaccgaataattgctatctcgactacatccccatgctattttatctttgtcttgcatacctttagtataaccgagttcaataccattcacctttagag 54769924  T
Q  441 ac 442  Q
    ||    
T  54769923 ac 54769922  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 54746550 - 54746460
Alignment:
Q  19 atacaatccatttcgatctgaatatgatgattgttccagaattgtagccatgcagtgcttgtcatagtccatattctgtaaccaaacttat 109  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||| | |||||||||| |||||||| ||||| ||||||||||||||    
T  54746550 atacaatccattttgatctgaatatgatgattgttcaacaattgtagcaacgcagtgcttgccatagtccgtattccgtaaccaaacttat 54746460  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 54763277 - 54763187
Alignment:
Q  19 atacaatccatttcgatctgaatatgatgattgttccagaattgtagccatgcagtgcttgtcatagtccatattctgtaaccaaacttat 109  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||| | |||||||||| |||||||| ||||| ||||||||||||||    
T  54763277 atacaatccattttgatctgaatatgatgattgttcaacaattgtagcaacgcagtgcttgccatagtccgtattccgtaaccaaacttat 54763187  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 54770731 - 54770641
Alignment:
Q  19 atacaatccatttcgatctgaatatgatgattgttccagaattgtagccatgcagtgcttgtcatagtccatattctgtaaccaaacttat 109  Q
    ||||||||||||| |||||||||||||||||||||| | ||||||||| | |||||||||| |||||||| ||||| ||||||||||||||    
T  54770731 atacaatccattttgatctgaatatgatgattgttcaacaattgtagcaacgcagtgcttgccatagtccgtattccgtaaccaaacttat 54770641  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 515
Target Start/End: Complemental strand, 22460538 - 22460462
Alignment:
Q  439 agacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccc 515  Q
    ||||||||||||||||||||| |||| |||  |||||||  |||||||||| ||| |||||||  ||||||||||||    
T  22460538 agacagtggcggagccacatgtggactgggattggccataacctacccatttattttgtgaaaagactataataccc 22460462  T

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Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 442 - 561
Target Start/End: Original strand, 37125553 - 37125672
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 541  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  37125553 cagtggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaacca 37125652  T
Q  542 tgccattgacccactctctc 561  Q
    |||||||||| |||||||||    
T  37125653 tgccattgactcactctctc 37125672  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 546
Target Start/End: Complemental strand, 17264953 - 17264880
Alignment:
Q  473 gccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccatgcca 546  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||  |  |||||||||| |||| | |||||||    
T  17264953 gccatggcctacccatttattttgtgaaaagactataatacccttgaagtaattttaatattactatcatgcca 17264880  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 490
Target Start/End: Original strand, 11033487 - 11033535
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccatta 490  Q
    ||||||||||||||| || |||||||| ||||||||||||  |||||||    
T  11033487 cagtggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr2 (Bit Score: 98; Significance: 6e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 442 - 583
Target Start/End: Original strand, 43326101 - 43326242
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 541  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 43326200  T
Q  542 tgccattgacccactctctcccactcccactctctcattcgt 583  Q
    || ||| |||||||| || |  ||||||||||||||||||||    
T  43326201 tgtcatcgacccactatcccaaactcccactctctcattcgt 43326242  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 442 - 516
Target Start/End: Original strand, 4009254 - 4009328
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 516  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  4009254 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattataccct 4009328  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 439 - 548
Target Start/End: Complemental strand, 36620268 - 36620159
Alignment:
Q  439 agacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaa 538  Q
    |||||||||||||||||| || |||| ||||||||| ||| ||| |||||||||| ||||||||||| |||||||||| ||  |||||| ||| |||||     
T  36620268 agacagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaatattacag 36620169  T
Q  539 ccatgccatt 548  Q
    | ||||||||    
T  36620168 ctatgccatt 36620159  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 29522648 - 29522579
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataat 511  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  29522648 cagtggcggagccacgtgtggactgggtatggccatggcctacccatttattttgtgaaaatactataat 29522579  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 443 - 559
Target Start/End: Complemental strand, 12307996 - 12307880
Alignment:
Q  443 agtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccat 542  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   |||||||||||||||||||||||    
T  12307996 agtggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaattactataatacctttggtataattttaattttacaaccat 12307897  T
Q  543 gccattgacccactctc 559  Q
     ||||||||||||||||    
T  12307896 accattgacccactctc 12307880  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 52096502 - 52096428
Alignment:
Q  18 catacaatccatttcgatctgaatatgatgattgttccagaattgtagcca-tgcagtgcttgtcatagtccata 91  Q
    ||||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||| || |||||||||||    
T  52096502 catacaatccatttcgatctgaatatgatgattgttcaataattatagccactgcagtgcatgccatagtccata 52096428  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 517
Target Start/End: Original strand, 5733161 - 5733236
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctc 517  Q
    ||||||||||||||| ||||||| ||| |||||||| |||||||||||| || || |||||||| || ||||||||    
T  5733161 cagtggcggagccacttggggactggggatggccatagcctacccattatttatgagaaattacaattataccctc 5733236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 546
Target Start/End: Original strand, 51285246 - 51285350
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaacca 541  Q
    ||||||||||||||| ||||||||||| | ||||||||||  ||||||| || || |||||||| | |||||||| ||  |||| | || | ||||||||    
T  51285246 cagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacca 51285345  T
Q  542 tgcca 546  Q
    |||||    
T  51285346 tgcca 51285350  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 516
Target Start/End: Complemental strand, 19659806 - 19659733
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 516  Q
    |||||||||||||||||| ||||  || ||||||||||||| ||||||| || || ||||||||||| |||||||    
T  19659806 cagtggcggagccacatgaggaccagg-atggccatggcctccccattatttttgggaaattactattataccct 19659733  T

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Target: scaffold0026 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 435 - 548
Target Start/End: Original strand, 91551 - 91664
Alignment:
Q  435 ttagagacagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaatttt 534  Q
    ||||| ||||||| |||||||| || ||||||||||||||||||||||||||| || |||||||||||||  ||||||||||    ||||||||||| ||    
T  91551 ttagaaacagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttgtcataattttaatatt 91650  T
Q  535 acaaccatgccatt 548  Q
    |||||||| |||||    
T  91651 acaaccattccatt 91664  T

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Target: scaffold1342 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 442 - 516
Target Start/End: Original strand, 1227 - 1301
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccct 516  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  1227 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattataccct 1301  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 512
Target Start/End: Complemental strand, 3805747 - 3805677
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataata 512  Q
    ||||||| ||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  3805747 cagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataata 3805677  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 493
Target Start/End: Original strand, 22775942 - 22775993
Alignment:
Q  442 cagtggcggagccacatggggacagggtatggccatggcctacccattaatt 493  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||||||    
T  22775942 cagtggcggagccacttggggacaggggctggccatagcctacccattaatt 22775993  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 548
Target Start/End: Complemental strand, 30253496 - 30253394
Alignment:
Q  446 ggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataataccctcaatataattttaattttacaaccatgcc 545  Q
    ||||||||||||||||    ||| ||||| |||||||| |||||| || || ||||||||||| |||||||| || | |||| ||  |||||| ||||||    
T  30253496 ggcggagccacatgggatttggggatggcaatggcctatccattatttttgggaaattactattataccctctatgttatttgaaaattacaaacatgcc 30253397  T
Q  546 att 548  Q
    |||    
T  30253396 att 30253394  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 21468244 - 21468289
Alignment:
Q  441 acagtggcggagccacatggggacagggtatggccatggcctaccc 486  Q
    |||||||||||| ||| || ||||| ||||||||||||||||||||    
T  21468244 acagtggcggagacacgtgaggacatggtatggccatggcctaccc 21468289  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 18478457 - 18478411
Alignment:
Q  444 gtggcggagccacatggggacagggtatggccatggcctacccatta 490  Q
    |||| |||||||||||||||| ||| ||||||| |||||||||||||    
T  18478457 gtggtggagccacatggggactggggatggccaaggcctacccatta 18478411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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