View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21576_low_4 (Length: 235)

Name: NF21576_low_4
Description: NF21576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21576_low_4
NF21576_low_4
[»] chr5 (14 HSPs)
chr5 (33-75)||(7129204-7129246)
chr5 (33-75)||(41511683-41511725)
chr5 (33-64)||(10409937-10409968)
chr5 (33-64)||(23141383-23141414)
chr5 (33-64)||(26522753-26522784)
chr5 (33-64)||(41092312-41092343)
chr5 (33-64)||(43394610-43394641)
chr5 (33-75)||(7672788-7672830)
chr5 (33-75)||(14164249-14164291)
chr5 (33-75)||(16306105-16306147)
chr5 (33-75)||(16538194-16538236)
chr5 (33-70)||(20563310-20563347)
chr5 (33-65)||(9487375-9487407)
chr5 (33-65)||(19322779-19322811)
[»] chr2 (17 HSPs)
chr2 (1-75)||(27351521-27351595)
chr2 (13-64)||(12896066-12896117)
chr2 (13-64)||(44543386-44543437)
chr2 (33-75)||(833326-833368)
chr2 (33-75)||(8430609-8430651)
chr2 (33-75)||(11658241-11658283)
chr2 (33-75)||(37130805-37130847)
chr2 (33-70)||(2132018-2132055)
chr2 (33-70)||(20709602-20709639)
chr2 (33-65)||(14335873-14335905)
chr2 (33-65)||(41327168-41327200)
chr2 (33-63)||(11736862-11736892)
chr2 (33-70)||(17370675-17370712)
chr2 (33-70)||(20639825-20639862)
chr2 (33-70)||(28611568-28611605)
chr2 (33-65)||(10128828-10128860)
chr2 (33-65)||(11131751-11131783)
[»] chr6 (8 HSPs)
chr6 (33-75)||(4099599-4099641)
chr6 (33-75)||(1394362-1394404)
chr6 (33-75)||(17203574-17203616)
chr6 (33-70)||(17905522-17905559)
chr6 (33-64)||(4810725-4810756)
chr6 (33-64)||(25068605-25068636)
chr6 (168-208)||(17080353-17080392)
chr6 (33-65)||(34294613-34294645)
[»] chr4 (24 HSPs)
chr4 (33-75)||(24050939-24050981)
chr4 (33-75)||(28379339-28379381)
chr4 (33-75)||(12795537-12795579)
chr4 (33-75)||(22293671-22293713)
chr4 (33-75)||(47769357-47769399)
chr4 (33-75)||(54652926-54652968)
chr4 (33-66)||(4942392-4942425)
chr4 (33-74)||(8396929-8396970)
chr4 (33-65)||(8119294-8119326)
chr4 (33-65)||(41850911-41850943)
chr4 (33-65)||(44500944-44500976)
chr4 (36-75)||(2177820-2177859)
chr4 (33-64)||(23952168-23952199)
chr4 (33-64)||(36639766-36639797)
chr4 (170-220)||(8079212-8079261)
chr4 (33-75)||(28813905-28813947)
chr4 (33-75)||(29968566-29968608)
chr4 (33-75)||(47427820-47427862)
chr4 (33-75)||(52688633-52688675)
chr4 (33-75)||(52688753-52688795)
chr4 (33-70)||(18000297-18000334)
chr4 (33-61)||(32010526-32010554)
chr4 (33-61)||(48076778-48076806)
chr4 (33-65)||(53143059-53143091)
[»] chr3 (15 HSPs)
chr3 (1-70)||(25916705-25916774)
chr3 (33-75)||(860684-860726)
chr3 (33-75)||(20876535-20876577)
chr3 (33-75)||(47501201-47501243)
chr3 (33-75)||(53046957-53046999)
chr3 (33-64)||(37760894-37760925)
chr3 (33-75)||(17758006-17758048)
chr3 (33-75)||(19059326-19059368)
chr3 (33-75)||(23777249-23777291)
chr3 (37-75)||(46452582-46452620)
chr3 (33-70)||(10267381-10267418)
chr3 (33-61)||(11454797-11454825)
chr3 (37-65)||(11523323-11523351)
chr3 (33-61)||(24365967-24365995)
chr3 (33-65)||(51654746-51654778)
[»] chr8 (17 HSPs)
chr8 (1-64)||(39921854-39921917)
chr8 (33-75)||(603908-603950)
chr8 (33-75)||(9389501-9389543)
chr8 (33-70)||(23959946-23959983)
chr8 (33-70)||(38111716-38111753)
chr8 (13-65)||(34948253-34948305)
chr8 (33-65)||(35618030-35618062)
chr8 (33-64)||(3458795-3458826)
chr8 (33-64)||(42046075-42046106)
chr8 (33-75)||(14683410-14683452)
chr8 (33-75)||(30206524-30206566)
chr8 (33-75)||(44434608-44434650)
chr8 (33-70)||(23086385-23086422)
chr8 (35-64)||(32063229-32063258)
chr8 (35-75)||(13461328-13461368)
chr8 (35-63)||(27853030-27853058)
chr8 (33-65)||(30436887-30436919)
[»] chr1 (24 HSPs)
chr1 (36-75)||(1648266-1648305)
chr1 (33-75)||(1155719-1155761)
chr1 (1-75)||(21882778-21882852)
chr1 (33-75)||(25931378-25931420)
chr1 (10-75)||(23480680-23480745)
chr1 (33-70)||(39282407-39282444)
chr1 (33-65)||(6537151-6537183)
chr1 (35-75)||(44264524-44264564)
chr1 (33-65)||(52741034-52741066)
chr1 (33-64)||(12116086-12116117)
chr1 (33-64)||(27296735-27296766)
chr1 (33-64)||(28949551-28949582)
chr1 (33-64)||(42491638-42491669)
chr1 (33-64)||(44099269-44099300)
chr1 (33-64)||(48411627-48411658)
chr1 (33-75)||(4099936-4099978)
chr1 (33-75)||(16165234-16165276)
chr1 (33-75)||(21618690-21618732)
chr1 (33-75)||(21618810-21618852)
chr1 (37-70)||(44451714-44451747)
chr1 (33-70)||(47791421-47791458)
chr1 (37-65)||(18913128-18913156)
chr1 (35-75)||(38685749-38685789)
chr1 (1-61)||(46533409-46533469)
[»] chr7 (21 HSPs)
chr7 (33-75)||(9141034-9141076)
chr7 (33-75)||(21128801-21128843)
chr7 (33-75)||(22325022-22325064)
chr7 (1-75)||(22967776-22967850)
chr7 (33-75)||(32277695-32277737)
chr7 (33-65)||(27711982-27712014)
chr7 (33-65)||(34838270-34838302)
chr7 (33-65)||(40449409-40449441)
chr7 (33-64)||(2354086-2354117)
chr7 (33-64)||(2852873-2852904)
chr7 (33-64)||(4680558-4680589)
chr7 (33-64)||(4681284-4681315)
chr7 (33-64)||(22773564-22773595)
chr7 (33-75)||(16673909-16673951)
chr7 (33-75)||(17648277-17648319)
chr7 (33-70)||(40686201-40686238)
chr7 (23-75)||(5553598-5553650)
chr7 (33-61)||(11650202-11650230)
chr7 (11-75)||(16375459-16375523)
chr7 (33-61)||(30991693-30991721)
chr7 (33-65)||(45418343-45418375)
[»] scaffold0097 (1 HSPs)
scaffold0097 (33-70)||(13441-13478)
[»] scaffold0167 (1 HSPs)
scaffold0167 (33-64)||(16594-16625)
[»] scaffold0090 (1 HSPs)
scaffold0090 (3-65)||(11986-12048)
[»] scaffold0059 (1 HSPs)
scaffold0059 (13-70)||(70606-70663)


Alignment Details
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 7129246 - 7129204
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7129246 tgacatacgaataataaaatgcaatatataattagtaatggtg 7129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 41511725 - 41511683
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  41511725 tgacatacgaataataaaatgcaatatataattggtaacggtg 41511683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 10409968 - 10409937
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  10409968 tgacatacgaataataaaatgcaatatataat 10409937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 23141414 - 23141383
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  23141414 tgacatacgaataataaaatgcaatatataat 23141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 26522753 - 26522784
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  26522753 tgacatacgaataataaaatgcaatatataat 26522784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 41092312 - 41092343
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  41092312 tgacatacgaataataaaatgcaatatataat 41092343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 43394610 - 43394641
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  43394610 tgacatacgaataataaaatgcaatatataat 43394641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 7672788 - 7672830
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||| |||||||||||||||||||  |||||||||    
T  7672788 tgacatacgaatgataaaatgcaatatataataggtaatggtg 7672830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 14164249 - 14164291
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||    
T  14164249 tgacatatgaataataaaatgcaatatataattggtaacggtg 14164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 16306147 - 16306105
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  16306147 tgacatacgaataataaaatgtaatatataattggtaacggtg 16306105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 16538236 - 16538194
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||| ||  |||||||||    
T  16538236 tgacatacgaataataaaatgcaatatatgataggtaatggtg 16538194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 20563347 - 20563310
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  20563347 tgacatgcgaataataaaatgcaatatataattggtaa 20563310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 9487375 - 9487407
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||| ||||||||||||||||||||||||    
T  9487375 tgacatacaaataataaaatgcaatatataatt 9487407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 19322811 - 19322779
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    ||||||||| |||||||||||||||||||||||    
T  19322811 tgacatacggataataaaatgcaatatataatt 19322779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27351521 - 27351595
Alignment:
Q  1 ccgtgcgttgcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||| | | ||| ||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  27351521 ccgtgcgtcgcacgggtttattgataagggattgacatacgaataataaaatgcaatatataattggtaacggtg 27351595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 12896066 - 12896117
Alignment:
Q  13 cgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataat 64  Q
    ||||||| |||| || ||| ||||||||||||||||||||||||||||||||    
T  12896066 cgggtttatcgtaaagggattgacatacgaataataaaatgcaatatataat 12896117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 44543386 - 44543437
Alignment:
Q  13 cgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataat 64  Q
    ||||||| | || |||||| ||||||||||||||||||||||||||||||||    
T  44543386 cgggtttattgtaaatggattgacatacgaataataaaatgcaatatataat 44543437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 833326 - 833368
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  833326 tgacatacgaataataaaatgcaatatataattggtaacggtg 833368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 8430609 - 8430651
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  8430609 tgacatacgaataataaaatgcaatatataattggtaacggtg 8430651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 11658283 - 11658241
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  11658283 tgacatacgaataataaaatgcaatatataattggtaacggtg 11658241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 37130805 - 37130847
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  37130805 tgacatacgaataataaaatgcaatatataattggtaacggtg 37130847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 2132018 - 2132055
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  2132018 tgacatacgaataataaaatgcaatatataattggtaa 2132055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 20709639 - 20709602
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  20709639 tgacatacgaataataaaatgcaatatataattggtaa 20709602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 14335873 - 14335905
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  14335873 tgacatacgaataataaaatgcaatatataatt 14335905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 41327200 - 41327168
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  41327200 tgacatacgaataataaaatgcaatatataatt 41327168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 11736892 - 11736862
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataa 63  Q
    |||||||||||||||||||||||||||||||    
T  11736892 tgacatacgaataataaaatgcaatatataa 11736862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 17370712 - 17370675
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  17370712 tgacatacgaataataaaatacaatatataattggtaa 17370675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 20639825 - 20639862
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  20639825 tgacaaacgaataataaaatgcaatatataattggtaa 20639862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 28611568 - 28611605
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  28611568 tgacatacaaataataaaatgcaatatataattggtaa 28611605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 10128828 - 10128860
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    ||||||||||||||||||||| |||||||||||    
T  10128828 tgacatacgaataataaaatgaaatatataatt 10128860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 11131783 - 11131751
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    ||||| |||||||||||||||||||||||||||    
T  11131783 tgacaaacgaataataaaatgcaatatataatt 11131751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 4099599 - 4099641
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  4099599 tgacatacgaataataaaatgcaatatataattagtaacggtg 4099641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 1394404 - 1394362
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  1394404 tgacatacgaataataaaatgcaatatataattggtaacggtg 1394362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 17203616 - 17203574
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  17203616 tgacatacgaataataaaatgcaatatataattggtaacggtg 17203574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 17905522 - 17905559
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  17905522 tgacatacgaataataaaatgcaatatataattggtaa 17905559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 4810725 - 4810756
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  4810725 tgacatacgaataataaaatgcaatatataat 4810756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 25068636 - 25068605
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  25068636 tgacatacgaataataaaatgcaatatataat 25068605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 17080392 - 17080353
Alignment:
Q  168 ggcaacatgatagtgaatgaaattgatgcgatgcatttttt 208  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  17080392 ggcaacatgatag-gaatgaaattggtgcgatgcatttttt 17080353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 34294645 - 34294613
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||| ||||||||||||||||||||||||||||    
T  34294645 tgacgtacgaataataaaatgcaatatataatt 34294613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 24050981 - 24050939
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  24050981 tgacatacgaataataaaatgcaatatataattagtaacggtg 24050939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 28379339 - 28379381
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  28379339 tgacatacgaataataaaatgcaatatataattggtaatggtg 28379381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 12795537 - 12795579
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  12795537 tgacatacgaataataaaatgcaatatataataggtaatggtg 12795579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 22293713 - 22293671
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  22293713 tgacatacgaataataaaatgcaatatataattggtaacggtg 22293671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 47769399 - 47769357
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  47769399 tgacatacgaataataaaatgcaatatataataggtaatggtg 47769357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 54652926 - 54652968
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  54652926 tgacatacgaataataaaatgcaatatataattggtaacggtg 54652968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 4942425 - 4942392
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatta 66  Q
    ||||||||||||||||||||||||||||||||||    
T  4942425 tgacatacgaataataaaatgcaatatataatta 4942392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 8396929 - 8396970
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggt 74  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  8396929 tgacatacgaataataaaatgcaatatataattggtattggt 8396970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 8119326 - 8119294
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  8119326 tgacatacgaataataaaatgcaatatataatt 8119294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 41850911 - 41850943
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  41850911 tgacatacgaataataaaatgcaatatataatt 41850943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 44500976 - 44500944
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  44500976 tgacatacgaataataaaatgcaatatataatt 44500944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 2177859 - 2177820
Alignment:
Q  36 catacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  2177859 catacgaataataaaatgcaatatataattggtaacggtg 2177820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 23952168 - 23952199
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  23952168 tgacatacgaataataaaatgcaatatataat 23952199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 36639797 - 36639766
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  36639797 tgacatacgaataataaaatgcaatatataat 36639766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 8079261 - 8079212
Alignment:
Q  170 caacatgatagtgaatgaaattgatgcgatgcattttttcaatataaaata 220  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||| |||||    
T  8079261 caacatgatag-gaatgaaattggtgcgatgcatttttttaatattaaata 8079212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 28813947 - 28813905
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||    
T  28813947 tgacatacgaatattaaaatgcaatatataattggtaacggtg 28813905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 29968608 - 29968566
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||    
T  29968608 tgacatacgaataatgaaatgcaatatataattggtaacggtg 29968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 47427820 - 47427862
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||    
T  47427820 tgacatatgaataataaaatgcaatatataattggtaacggtg 47427862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 52688633 - 52688675
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  52688633 tgacatacaaataataaaatgcaatatataattggtaacggtg 52688675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 52688753 - 52688795
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  52688753 tgacatacaaataataaaatgcaatatataattggtaacggtg 52688795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 18000297 - 18000334
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  18000297 tgacaaacgaataataaaatgcaatatataattggtaa 18000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 32010526 - 32010554
Alignment:
Q  33 tgacatacgaataataaaatgcaatatat 61  Q
    |||||||||||||||||||||||||||||    
T  32010526 tgacatacgaataataaaatgcaatatat 32010554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 48076806 - 48076778
Alignment:
Q  33 tgacatacgaataataaaatgcaatatat 61  Q
    |||||||||||||||||||||||||||||    
T  48076806 tgacatacgaataataaaatgcaatatat 48076778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 53143059 - 53143091
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||| ||||||||||||||||||||||||    
T  53143059 tgacatacaaataataaaatgcaatatataatt 53143091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25916705 - 25916774
Alignment:
Q  1 ccgtgcgttgcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataattagtaa 70  Q
    |||||||| |||||||||| | ||||| ||| ||||||| ||| ||||||||||||||||||||| ||||    
T  25916705 ccgtgcgtcgcacgggtttattgttaaaggattgacatatgaaaaataaaatgcaatatataattggtaa 25916774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 860726 - 860684
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  860726 tgacatacgaataataaaatgcaatatataattggtaacggtg 860684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 20876535 - 20876577
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  20876535 tgacatacgaataataaaatgcaatatataattggtaacggtg 20876577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 47501201 - 47501243
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  47501201 tgacatacgaataataaaatgcaatatataattggtaacggtg 47501243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 53046957 - 53046999
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  53046957 tgacatacgaataataaaatgcaatatataattggtaacggtg 53046999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 37760925 - 37760894
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  37760925 tgacatacgaataataaaatgcaatatataat 37760894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 17758048 - 17758006
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  17758048 tgacatacgaataataaaatgtaatatataattggtaacggtg 17758006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 19059368 - 19059326
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  19059368 tgacatacgaataataaaatgtaatatataattggtaacggtg 19059326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 23777291 - 23777249
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||| ||||||||||||||||||||||||  |||||||||    
T  23777291 tgacatatgaataataaaatgcaatatataataggtaatggtg 23777249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 46452620 - 46452582
Alignment:
Q  37 atacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  46452620 atacgaataataaaatgcaatatataatcggtaatggtg 46452582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 10267418 - 10267381
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  10267418 tgacatacgaataataaaatgtaatatataattggtaa 10267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 11454825 - 11454797
Alignment:
Q  33 tgacatacgaataataaaatgcaatatat 61  Q
    |||||||||||||||||||||||||||||    
T  11454825 tgacatacgaataataaaatgcaatatat 11454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 11523351 - 11523323
Alignment:
Q  37 atacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||    
T  11523351 atacgaataataaaatgcaatatataatt 11523323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 24365995 - 24365967
Alignment:
Q  33 tgacatacgaataataaaatgcaatatat 61  Q
    |||||||||||||||||||||||||||||    
T  24365995 tgacatacgaataataaaatgcaatatat 24365967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 51654778 - 51654746
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||| ||||||||||||||||||||||||    
T  51654778 tgacatacaaataataaaatgcaatatataatt 51654746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39921854 - 39921917
Alignment:
Q  1 ccgtgcgttgcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataat 64  Q
    |||||| |||| ||||||| | || || ||| ||||||||||||||||||||||||||||||||    
T  39921854 ccgtgctttgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 39921917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 603908 - 603950
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  603908 tgacatacgaataataaaatgcaatatataattggtaacggtg 603950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 9389543 - 9389501
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  9389543 tgacatacgaataataaaatgcaatatataattggtaacggtg 9389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 23959946 - 23959983
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  23959946 tgacatacgaataataaaatgcaatatataattggtaa 23959983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 38111753 - 38111716
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  38111753 tgacatacgaataataaaatgcaatatataattggtaa 38111716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 34948305 - 34948253
Alignment:
Q  13 cgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataatt 65  Q
    ||||||| | || |||||| ||||||||||||||||||||| |||||||||||    
T  34948305 cgggtttattgtaaatggattgacatacgaataataaaatgtaatatataatt 34948253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 35618062 - 35618030
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  35618062 tgacatacgaataataaaatgcaatatataatt 35618030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 3458795 - 3458826
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  3458795 tgacatacgaataataaaatgcaatatataat 3458826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 42046106 - 42046075
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  42046106 tgacatacgaataataaaatgcaatatataat 42046075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 14683452 - 14683410
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||||||||| |||||| |||| ||||    
T  14683452 tgacatacgaataataaaatgcaatacataattggtaacggtg 14683410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 30206566 - 30206524
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  30206566 tgacatacaaataataaaatgcaatatataattggtaacggtg 30206524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 44434650 - 44434608
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||||||| |||||||| |||| ||||    
T  44434650 tgacatacgaataataaaatgcaaaatataattggtaacggtg 44434608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 23086422 - 23086385
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  23086422 tgacatacggataataaaatgcaatatataattggtaa 23086385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 32063258 - 32063229
Alignment:
Q  35 acatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||    
T  32063258 acatacgaataataaaatgcaatatataat 32063229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 13461328 - 13461368
Alignment:
Q  35 acatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||| |||||||||||||||||||||||| |||| ||||    
T  13461328 acatacaaataataaaatgcaatatataattggtaacggtg 13461368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 27853030 - 27853058
Alignment:
Q  35 acatacgaataataaaatgcaatatataa 63  Q
    |||||||||||||||||||||||||||||    
T  27853030 acatacgaataataaaatgcaatatataa 27853058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 30436887 - 30436919
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||| ||||||||||||||    
T  30436887 tgacatacgaataataaagtgcaatatataatt 30436919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 1648305 - 1648266
Alignment:
Q  36 catacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  1648305 catacgaataataaaatgcaatatataattggtaatggtg 1648266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 1155719 - 1155761
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  1155719 tgacatacgaataataaaatgcaatatataataggtaatggtg 1155761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21882852 - 21882778
Alignment:
Q  1 ccgtgcgttgcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| ||| || ||| | ||||| ||| |||||||| |||||||||||||||||||||||| |||| ||||    
T  21882852 ccgtgcgtcgcaaggatttattgttaagggattgacatacaaataataaaatgcaatatataattggtaagggtg 21882778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 25931378 - 25931420
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  25931378 tgacatacgaataataaaatgcaatatataattggtaacggtg 25931420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 23480680 - 23480745
Alignment:
Q  10 gcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||| | |||||  || |||||||||||||||||||| |||||||||||| |||| ||||    
T  23480680 gcacgggtttattgttaactgattgacatacgaataataaaatacaatatataattggtaacggtg 23480745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 39282444 - 39282407
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39282444 tgacatacgaataataaaatgcaatatataattggtaa 39282407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 6537151 - 6537183
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  6537151 tgacatacgaataataaaatgcaatatataatt 6537183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 44264564 - 44264524
Alignment:
Q  35 acatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  44264564 acatacgaataataaaatgcaatatataattggtaacggtg 44264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 52741066 - 52741034
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  52741066 tgacatacgaataataaaatgcaatatataatt 52741034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 12116117 - 12116086
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  12116117 tgacatacgaataataaaatgcaatatataat 12116086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 27296766 - 27296735
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  27296766 tgacatacgaataataaaatgcaatatataat 27296735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 28949551 - 28949582
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  28949551 tgacatacgaataataaaatgcaatatataat 28949582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 42491638 - 42491669
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  42491638 tgacatacgaataataaaatgcaatatataat 42491669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 44099269 - 44099300
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  44099269 tgacatacgaataataaaatgcaatatataat 44099300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 48411627 - 48411658
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  48411627 tgacatacgaataataaaatgcaatatataat 48411658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 4099936 - 4099978
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||||||||||||||| |||||||||||| |||| ||||    
T  4099936 tgacatacgaataataaaattcaatatataattggtaacggtg 4099978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 16165234 - 16165276
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||    
T  16165234 tgacatacgaataatgaaatgcaatatataattggtaacggtg 16165276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 21618732 - 21618690
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  21618732 tgacatacaaataataaaatgcaatatataattggtaacggtg 21618690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 21618852 - 21618810
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  21618852 tgacatacaaataataaaatgcaatatataattggtaacggtg 21618810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 44451714 - 44451747
Alignment:
Q  37 atacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||| ||||    
T  44451714 atacgaataataaaatgcaatatataattggtaa 44451747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 47791458 - 47791421
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  47791458 tgacatatgaataataaaatgcaatatataattggtaa 47791421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 18913156 - 18913128
Alignment:
Q  37 atacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||    
T  18913156 atacgaataataaaatgcaatatataatt 18913128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 38685789 - 38685749
Alignment:
Q  35 acatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||| ||||||||||||||||||||||||| |||| ||||    
T  38685789 acataagaataataaaatgcaatatataattggtaacggtg 38685749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 46533469 - 46533409
Alignment:
Q  1 ccgtgcgttgcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatat 61  Q
    |||||||| ||||| |||| | ||||| ||| | ||||||||||||||||||| |||||||    
T  46533469 ccgtgcgtcgcacgagtttattgttaagggattaacatacgaataataaaatgtaatatat 46533409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 9141034 - 9141076
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  9141034 tgacatacgaataataaaatgaaatatataattagtaacggtg 9141076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 21128843 - 21128801
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  21128843 tgacatacgaataataaaatgcaatatataattggtaacggtg 21128801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 22325064 - 22325022
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  22325064 tgacatacgaataataaaatgcaatatataattggtaacggtg 22325022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22967776 - 22967850
Alignment:
Q  1 ccgtgcgttgcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| ||| || ||| | ||||| ||| |||||||| |||||||||||||||||||||||| |||| ||||    
T  22967776 ccgtgcgtcgcaaggatttattgttaagggattgacatacaaataataaaatgcaatatataattggtaagggtg 22967850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 32277695 - 32277737
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  32277695 tgacatacgaataataaaatgcaatatataattggtaacggtg 32277737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 27711982 - 27712014
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  27711982 tgacatacgaataataaaatgcaatatataatt 27712014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 34838302 - 34838270
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  34838302 tgacatacgaataataaaatgcaatatataatt 34838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 40449409 - 40449441
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||||||||||||||||||||||||||||    
T  40449409 tgacatacgaataataaaatgcaatatataatt 40449441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 2354086 - 2354117
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  2354086 tgacatacgaataataaaatgcaatatataat 2354117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 2852873 - 2852904
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  2852873 tgacatacgaataataaaatgcaatatataat 2852904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 4680558 - 4680589
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  4680558 tgacatacgaataataaaatgcaatatataat 4680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 4681284 - 4681315
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  4681284 tgacatacgaataataaaatgcaatatataat 4681315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 22773564 - 22773595
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  22773564 tgacatacgaataataaaatgcaatatataat 22773595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 16673951 - 16673909
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  16673951 tgacatacaaataataaaatgcaatatataattggtaacggtg 16673909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 17648319 - 17648277
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  17648319 tgacatacaaataataaaatgcaatatataattggtaacggtg 17648277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 40686201 - 40686238
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  40686201 tgacatgcgaataataaaatgcaatatataattggtaa 40686238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 5553598 - 5553650
Alignment:
Q  23 gttaatggaatgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||| ||| ||||||| ||||||||||||| |||||||||||  ||||||||    
T  5553598 gttaagggattgacatatgaataataaaatgaaatatataattgataatggtg 5553650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 11650230 - 11650202
Alignment:
Q  33 tgacatacgaataataaaatgcaatatat 61  Q
    |||||||||||||||||||||||||||||    
T  11650230 tgacatacgaataataaaatgcaatatat 11650202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 16375459 - 16375523
Alignment:
Q  11 cacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataattagtaatggtg 75  Q
    ||||||||| | ||||| ||| | |||||||| |||||||||| ||||||||||| |||| ||||    
T  16375459 cacgggtttattgttaagggattaacatacgagtaataaaatgtaatatataattggtaacggtg 16375523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 30991721 - 30991693
Alignment:
Q  33 tgacatacgaataataaaatgcaatatat 61  Q
    |||||||||||||||||||||||||||||    
T  30991721 tgacatacgaataataaaatgcaatatat 30991693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 45418343 - 45418375
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataatt 65  Q
    |||||||| ||||||||||||||||||||||||    
T  45418343 tgacatacaaataataaaatgcaatatataatt 45418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 13478 - 13441
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  13478 tgacatacgaataataaaatgcaatatataattggtaa 13441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 16625 - 16594
Alignment:
Q  33 tgacatacgaataataaaatgcaatatataat 64  Q
    ||||||||||||||||||||||||||||||||    
T  16625 tgacatacgaataataaaatgcaatatataat 16594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 11986 - 12048
Alignment:
Q  3 gtgcgttgcacgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataatt 65  Q
    |||||| ||||| |||| |  |||| ||| ||||||| |||||||||||||||||||||||||    
T  11986 gtgcgtcgcacgagtttattattaagggattgacatatgaataataaaatgcaatatataatt 12048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 70606 - 70663
Alignment:
Q  13 cgggtttttcgttaatggaatgacatacgaataataaaatgcaatatataattagtaa 70  Q
    ||||||| | ||||| ||| ||| ||||||||||||||||||| ||||||||| ||||    
T  70606 cgggtttattgttaagggattgagatacgaataataaaatgcattatataattggtaa 70663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University