View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21577_high_1 (Length: 1295)
Name: NF21577_high_1
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21577_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 1072; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1072; E-Value: 0
Query Start/End: Original strand, 1 - 1162
Target Start/End: Complemental strand, 49584500 - 49583343
Alignment:
| Q |
1 |
ttataacatctaggttcctccgagtgccaacctcttgcaagtagacgaggccaaacggcttcccgaaagagatcatcagttcgagatttacttaatctga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49584500 |
ttataacatctaggttcctccgagtgccaacctcttgcaagtagacgaggccaaacggcttcccaaaagagatcatcagttcgagatttacttaatctga |
49584401 |
T |
|
| Q |
101 |
aatttcctgtcagaaagcttattatttctgagggttcaagcattgcacaagcttttcccttcggtatttttgaaggaccgaccagaacaacttcattgga |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49584400 |
agtttcctgtcagaaagcttattatttctgagggttcaagcattgcacaagcttttcccttcggtatttttgaaggaccgaccagaacagcttcattgga |
49584301 |
T |
|
| Q |
201 |
ttttacatcatcaacatgggggcatataagatcnnnnnnncctttaccgattgctaatccatcaacaagggctttgagcccaattaaatttttcagagtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49584300 |
ttttacatcatcaacatgggggcatataagatctttttttcctttaccgattgctaatccatcaacaagggctttgagcccaattaaatttttcagagtc |
49584201 |
T |
|
| Q |
301 |
gaaaaataatcttctggactaatgttcctttctgcaagtgtctctgacacctaccaatcaattgaacatagcaaataataagtatggaagacaaatcaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
49584200 |
gaaaaataatcttctggactaatgttcctctctgcaagtgtctctgacacctaccaatcaattgaacatagcaa----taagtatggaagacaaatcaat |
49584105 |
T |
|
| Q |
401 |
aagtatagatccaatccatgacagtggacggagtaacaatcgatattaaaatgaaaaactttgaaattgtttatgtcattacctcaagtaattcattttg |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49584104 |
aagtatagatccaatccatgacaatggacggagtaacaatcgatattaaaatgaaaaactttgaaattgtttatgtcattacctcaagtaattcattttg |
49584005 |
T |
|
| Q |
501 |
aacttcctccggtacattcggcatcagacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaagttgcatttcttgcttttgcct |
600 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
49584004 |
aacttcctccggtacattcggtatcagacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaagttgcatttcttgcttttccct |
49583905 |
T |
|
| Q |
601 |
tccctacatccacaccatctctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583904 |
tccctacatccacaccatctctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttt |
49583805 |
T |
|
| Q |
701 |
tcacttcaacgaagttcttcccaaatatatataaaccaaggactaaaccggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583804 |
tcacttcaacgaagttcttcccaaatatatataaaccaaggactaaaccggcctcttcaatttcagtccagttgtcacttcgagagccaggaacaagaat |
49583705 |
T |
|
| Q |
801 |
ctgccctttatgttcatgctcctcatgcatcccaatctttgtttcttcccgaatatcataactctttatccaagttattgggataggtaatgctatttga |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49583704 |
ctgccctttatgttcatgctcctcatgcatcccaatctttgtttcttcccgaatatcataactctttatccaagttattgggataggtaatcctatttga |
49583605 |
T |
|
| Q |
901 |
aagttgtggtgtatactttctgcctcggtgttattttgcaacaaaatatactcagactttgaaattaaaattggaagttcagcctggtaaatttcaccca |
1000 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583604 |
aagttgtggtgtatactttctgcctcggtgttattttgcaacaaaatatactcagactttgaaattaaaattggaagttcagcctggtaaatttcaccca |
49583505 |
T |
|
| Q |
1001 |
cctcaacagatgtttccggatcatcaaaaacaccatatttaatggaccacggaagtgattgttcatctggttcagctgcattcacctgtccaaaaattta |
1100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583504 |
cctcaacagatgtttccggatcatcaaaaacaccatatttaatggaccacggaagtgattgttcatctggttcagctgcattcacctgtccaaaaattta |
49583405 |
T |
|
| Q |
1101 |
aatatatttaaagggagcatatatatacaatagttggttttaaggcaaattgagtttgctct |
1162 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
49583404 |
aatatatttaaagatagcatatatttacaatagttggttttaaggaaaattgagtttgctct |
49583343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 4e-66
Query Start/End: Original strand, 1163 - 1295
Target Start/End: Complemental strand, 49583286 - 49583154
Alignment:
| Q |
1163 |
aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat |
1262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583286 |
aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat |
49583187 |
T |
|
| Q |
1263 |
taatttttataagaattatgcaatgttgtgatt |
1295 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
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|
| T |
49583186 |
taatttttataagacttatgcaatgttgtgatt |
49583154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 649 - 813
Target Start/End: Complemental strand, 49589153 - 49588989
Alignment:
| Q |
649 |
ccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatatataaaccaaggactaaac |
748 |
Q |
| |
|
|||||||||||||||| | | |||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||| |||| || |||||||||||| |
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|
| T |
49589153 |
ccataatagaatgacagtttatccttcattttcttattgcgtataaaccttttcacttgaacgaagttcttcccaaatgtataaaagccaaggactaaat |
49589054 |
T |
|
| Q |
749 |
cggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgt |
813 |
Q |
| |
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|||||||||||||||||||||| | ||| ||| ||| ||| |||||||||||| |||||||||| |
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| T |
49589053 |
tggcctcttcgatttcagtccaggtatcagttcaagaaccatgaacaagaatcttccctttatgt |
49588989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 1170 - 1295
Target Start/End: Complemental strand, 5199124 - 5198998
Alignment:
| Q |
1170 |
aaattcattactaaattatgaaaataattacacta-tgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaattt |
1268 |
Q |
| |
|
||||||||||| |||||||||||| ||||| | || |||||||| ||||||| |||||||||||||| ||||||||| |||| |||| ||||| |||||| |
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|
| T |
5199124 |
aaattcattacaaaattatgaaaagaattatagtaatgaaattatgaagaaacaatgagaaattaagttattatacattatatgataatataaataattt |
5199025 |
T |
|
| Q |
1269 |
ttataagaattatgcaatgttgtgatt |
1295 |
Q |
| |
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| |||| | || ||||||||| ||||| |
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| T |
5199024 |
taataatatttgtgcaatgttatgatt |
5198998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1203 - 1287
Target Start/End: Original strand, 4848615 - 4848699
Alignment:
| Q |
1203 |
tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatg |
1287 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||| | || ||||||| |
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|
| T |
4848615 |
tatgaaattatgaagaaacaatgagaaattaagttattatacattatatgatagtataaataattttaataatatttgtgcaatg |
4848699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1163 - 1240
Target Start/End: Complemental strand, 15522683 - 15522606
Alignment:
| Q |
1163 |
aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctatt |
1240 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||||| ||| |||||| ||| ||| ||| |||||||||| |||| |
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|
| T |
15522683 |
aagaaacaaattcattacataataatgaaaataattacattataaaattatgaataaacaataagaaattaagttatt |
15522606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1076 - 1109
Target Start/End: Complemental strand, 49588607 - 49588574
Alignment:
| Q |
1076 |
ctgcattcacctgtccaaaaatttaaatatattt |
1109 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
49588607 |
ctgcattcacctgtccaaatatttaaatatattt |
49588574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1203 - 1294
Target Start/End: Complemental strand, 7411429 - 7411339
Alignment:
| Q |
1203 |
tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgat |
1294 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||| ||||||||| ||||||||| |||| ||||||| |||||| || || ||||||||||| |
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| T |
7411429 |
tatgaaaagaagaagaaacaat-agaaattaagttattatacattataagatatcataaataattttaataagatttgtgaaatgttgtgat |
7411339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1182 - 1250
Target Start/End: Original strand, 35811949 - 35812017
Alignment:
| Q |
1182 |
aaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatata |
1250 |
Q |
| |
|
||||||| ||| ||||||| |||| ||||||||||||| | |||||||||||| ||||||||| |||| |
|
|
| T |
35811949 |
aaattattgaaagaattacattatggaattaagaagaaacagtgagaaattaagttattatacattata |
35812017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 15769547 - 15769610
Alignment:
| Q |
13 |
ggttcctccgagtgccaacctcttgcaagtagacgaggccaaacggcttcccgaaagagatcat |
76 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||| ||||||||||| ||||||| |||||||||| |
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| T |
15769547 |
ggttgctcagagtgccaacctcttgccagtaagcgaggccaaacagcttcccagaagagatcat |
15769610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1163 - 1212
Target Start/End: Complemental strand, 16424950 - 16424901
Alignment:
| Q |
1163 |
aagaaataaattcattactaaattatgaaaataattacactatgaaatta |
1212 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||| || |||||||||| |
|
|
| T |
16424950 |
aagaaacaaattcattacaaaattaagaaaataatttcattatgaaatta |
16424901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 46643132 - 46643193
Alignment:
| Q |
13 |
ggttcctccgagtgccaacctcttgcaagtagacgaggccaaacggcttcccgaaagagatc |
74 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||| ||||||||||| ||||||| |||||||| |
|
|
| T |
46643132 |
ggttgctcagagtgccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatc |
46643193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1226 - 1295
Target Start/End: Complemental strand, 6134296 - 6134227
Alignment:
| Q |
1226 |
agaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgatt |
1295 |
Q |
| |
|
|||||| ||| ||||||||| ||| |||||||||| | ||||| |||||| || ||||||||||||||| |
|
|
| T |
6134296 |
agaaatcaagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgatt |
6134227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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