View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21577_high_2 (Length: 571)

Name: NF21577_high_2
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21577_high_2
NF21577_high_2
[»] chr4 (24 HSPs)
chr4 (2-557)||(5035378-5035933)
chr4 (1-492)||(2525510-2526003)
chr4 (1-313)||(2490883-2491195)
chr4 (1-231)||(2534068-2534300)
chr4 (1-312)||(2486062-2486373)
chr4 (69-292)||(2519056-2519279)
chr4 (225-308)||(2536564-2536647)
chr4 (186-313)||(2467470-2467597)
chr4 (406-492)||(2536651-2536737)
chr4 (434-486)||(2625296-2625348)
chr4 (421-492)||(2491249-2491320)
chr4 (168-303)||(2621163-2621298)
chr4 (163-289)||(2477485-2477611)
chr4 (250-303)||(2367678-2367731)
chr4 (1-57)||(2547299-2547355)
chr4 (434-493)||(2467679-2467738)
chr4 (9-96)||(2477349-2477436)
chr4 (239-289)||(5106330-5106380)
chr4 (250-304)||(6007669-6007723)
chr4 (16-117)||(2467315-2467416)
chr4 (432-493)||(5101944-5102005)
chr4 (435-515)||(2486430-2486510)
chr4 (430-486)||(2519366-2519422)
chr4 (253-289)||(12121013-12121049)
[»] chr7 (2 HSPs)
chr7 (189-286)||(2576415-2576512)
chr7 (256-304)||(15091356-15091404)
[»] chr5 (3 HSPs)
chr5 (250-286)||(32268774-32268810)
chr5 (250-304)||(41900257-41900311)
chr5 (253-298)||(12846943-12846988)
[»] chr1 (3 HSPs)
chr1 (250-286)||(15837982-15838018)
chr1 (250-304)||(33161437-33161491)
chr1 (262-303)||(7555449-7555490)
[»] chr8 (1 HSPs)
chr8 (250-298)||(32152210-32152258)


Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 2 - 557
Target Start/End: Original strand, 5035378 - 5035933
Alignment:
Q  2 gagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaaggg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  5035378 gagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatttgaggtttaaaggg 5035477  T
Q  102 gaaacggagattttggctagaaacttgccgaggtcggcttctcgggaccacgcattggaagtgagagtgatattgagtgatgtaatattagggaaccttt 201  Q
    ||| |||||||||| |||||||||| ||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035478 gaagcggagattttcgctagaaactcgccgaggtgagcttctcgggaccaggcattggaagtgagagtgatattgagtgatgtaatattagggaaccttt 5035577  T
Q  202 caaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaaag 301  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5035578 caaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaag 5035677  T
Q  302 agacctgaaactaccgtttgtgattggcatatcttgttctgagacgtgatagagagactttattctgcgggggtgatcggcaaaacctagattcccatta 401  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035678 agacctgaaactactgtttgtgattggcatatcttgttctgagacgtgatagagagactttattctgcgggggtgatcggcaaaacctagattcccatta 5035777  T
Q  402 ggacgaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttt 501  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5035778 ggacgaagaagtttgaatgtgttgttctcctcgtcgttgaggaatttgaagatgttttcccataaatcctctggtaaatttgaacgtgttgcttctgttt 5035877  T
Q  502 ctgttcccatttttcgtttcttagggttttcctctgttgctgctattttctctgct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035878 ctgttcccatttttcgtttcttagggttttcctctgttgctgctattttctctgct 5035933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 2525510 - 2526003
Alignment:
Q  1 tgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaagg 100  Q
    ||||||| || ||| ||||||| |||| ||||||| | ||||||||||||| ||||||| ||   | ||||||||||| |||||||||||||||||||||    
T  2525510 tgagagatgtcaaatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagg 2525609  T
Q  101 ggaaacggagattttggctagaaacttgccgaggtcggcttctcgggaccacgcattg-ga-agtgagagtgatattgagtgatgtaatattagggaacc 198  Q
    | ||  |||||||| |  ||||||||  | |||||| |||||||||| || ||||| | || || |||||||||||||||||||| ||| ||||||||||    
T  2525610 gaaagtggagatttggtttagaaactcactgaggtcagcttctcgggcccccgcatcgagagagagagagtgatattgagtgatgcaatgttagggaacc 2525709  T
Q  199 tttcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgaggga 298  Q
    ||||||||||||||||||| |||||||| ||||| | ||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  2525710 tttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttgagacgaggga 2525809  T
Q  299 aagagacctgaaactaccgtttgtgattggcatatcttgttctgagacgtgatagagagactttattctgcgggggtgatcggcaaaacctagattccca 398  Q
     ||||| |||||||||||||| ||||| || | |  ||||| ||||||||| |||||||    |||||||||  ||  ||    |||||||| |||||||    
T  2525810 gagagatctgaaactaccgttggtgatgggtagagattgttttgagacgtggtagagagttcctattctgcgctggatatgttgaaaacctatattccca 2525909  T
Q  399 ttaggacgaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttg 492  Q
    | | |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  2525910 tcaagacgaagaaggttgaaggtgttgttgtcctcgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatatgaacgtgttg 2526003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 2490883 - 2491195
Alignment:
Q  1 tgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaagg 100  Q
    ||||||| || ||| |||||||| || |||||||||||||||| |||||| | ||||||||||  |  | |||||||||||||||||||||||| |||||    
T  2490883 tgagagatgtcaaatttttcatcgtcccggacaaagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagg 2490982  T
Q  101 ggaaacggagattttggctagaaacttgccgaggtcggcttctcgggaccacgcattgg-aagtgagagtgatattgagtgatgtaatattagggaacct 199  Q
    | ||  ||||||||   | |||| || || ||||||  ||||| ||  ||  | || || ||| ||| |||||||||| ||||||||| |||||||||||    
T  2490983 gaaagtggagatttgtccaagaagctcgctgaggtcaacttctaggttcct-gtatcgggaagagagggtgatattgattgatgtaatgttagggaacct 2491081  T
Q  200 ttcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaa 299  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||| |||||||| |||||||| |||||||||||||| ||||| ||     
T  2491082 ttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgagacgagtgag 2491181  T
Q  300 agagacctgaaact 313  Q
    ||||||||||||||    
T  2491182 agagacctgaaact 2491195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2534068 - 2534300
Alignment:
Q  1 tgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaagg 100  Q
    ||||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||     
T  2534068 tgagagatgttaaatttttcatcttcttggacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgatttgaggtctaaagt 2534167  T
Q  101 ggaaacggagattttggctagaaacttgcc-gaggtcggcttctcgg---gaccacgcattggaagtgagagtgatattgagtgatgtaatattagggaa 196  Q
    ||||   |||| || ||||||||||| ||| |||||||||||| |||    ||||| ||| ||  | |||||||||||||||||||||||||||||||||    
T  2534168 ggaagtagagagttcggctagaaactcgccagaggtcggcttcacggacaaaccacccatcgg--gagagagtgatattgagtgatgtaatattagggaa 2534265  T
Q  197 cctttcaaagagacgattaaggaaagggattgttg 231  Q
    |||||||||||| || |||||||||||||||||||    
T  2534266 cctttcaaagaggcggttaaggaaagggattgttg 2534300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2486062 - 2486373
Alignment:
Q  1 tgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaagg 100  Q
    ||||||| || ||| |||||||||| | ||||||||||||||   ||||| |||||| |||||  |  | |||||||| ||| ||||||||||| |||||    
T  2486062 tgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaagcctgatgggctcgtagagagtgagtgatttgaggtccaaagg 2486161  T
Q  101 ggaaacggagattttggctagaaacttgccgaggtcggcttctcgggaccacgcattggaagtgagagtgatattgagtgatgtaatattagggaacctt 200  Q
    | ||  |||||| |  |  |||| || |||||||||   ||||| |  ||   | | ||||| ||||||||||||| | ||||||| |||||||||||      
T  2486162 gaaagtggagatatgtgtaagaagctcgccgaggtcactttctctgttcctgtcttgggaagagagagtgatattgtgggatgtaacattagggaaccca 2486261  T
Q  201 tcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaaa 300  Q
    | ||||||||||| ||||||||||||||||  |||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||| |    
T  2486262 taaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggaga 2486361  T
Q  301 gagacctgaaac 312  Q
    ||||||| ||||    
T  2486362 gagacctaaaac 2486373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 69 - 292
Target Start/End: Original strand, 2519056 - 2519279
Alignment:
Q  69 tggtagagagcgagcgatttgaggtctaaaggggaaacggagattttggctagaaacttgccgaggtcggcttctcgggaccacgcattggaagtgagag 168  Q
    |||||||||| ||||||| |||||||||||||| ||  | | ||||||| ||||| || || ||||| | ||||||||  ||   | | ||||| |||||    
T  2519056 tggtagagagtgagcgatatgaggtctaaagggaaagtgcatattttggttagaagctcgctgaggttgtcttctcggagcctgtcttgggaagagagag 2519155  T
Q  169 tgatattgagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttggt 268  Q
    |||| |||||||||||||  || |||||||| ||||||||||||| ||||||||||||||||   || |||||| ||||  || |||||| |||||||||    
T  2519156 tgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggt 2519255  T
Q  269 gatggagagaaactgttttgaaac 292  Q
    |||||| |||||||||||||||||    
T  2519256 gatggacagaaactgttttgaaac 2519279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 2536564 - 2536647
Alignment:
Q  225 attgttgcctcggagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaaagagacctg 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||    
T  2536564 attgttgcctcggagattttgaccaagaatcgaagaaggttggtgatggacagaaactgttttgaaatgagggagagagacctg 2536647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 186 - 313
Target Start/End: Original strand, 2467470 - 2467597
Alignment:
Q  186 atattagggaacctttcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttggtgatggagagaaactgtt 285  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||| | ||||| ||   |||  |||||||||||| |||||| ||||| | ||||||||    
T  2467470 atattggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactgtt 2467569  T
Q  286 ttgaaacgagggaaagagacctgaaact 313  Q
    |||| |||| ||| |||||| |||||||    
T  2467570 ttgagacgacggagagagacttgaaact 2467597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 2536651 - 2536737
Alignment:
Q  406 gaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttg 492  Q
    |||||||| |||| |||||| | ||||||| |||||| |||||||| |||| ||||||||| ||||||||||||| |||||||||||    
T  2536651 gaagaaggctgaaggtgttgctgtcctcgtggttgagaaatttgaagatgtattcccataactcctctggtaaatatgaacgtgttg 2536737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 2625348 - 2625296
Alignment:
Q  434 gtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaac 486  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  2625348 gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 2625296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 492
Target Start/End: Original strand, 2491249 - 2491320
Alignment:
Q  421 tgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttg 492  Q
    ||||||| ||||||||||| ||||||||||  |||||||||||||| | ||||||||||  |||||||||||    
T  2491249 tgttgttgtcctcgtcgttcaggaatttgaggatgtgttcccataacttctctggtaaacatgaacgtgttg 2491320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 2621298 - 2621163
Alignment:
Q  168 gtgatattgagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttgg 267  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| |||  || ||||||||| |||   ||||||||| |||   |||| || ||||||||||    
T  2621298 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 2621199  T
Q  268 tgatggagagaaactgttttgaaacgagggaaagag 303  Q
    ||||||| | ||||||||| || |||||||| ||||    
T  2621198 tgatggacaaaaactgtttggatacgagggagagag 2621163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 2477485 - 2477611
Alignment:
Q  163 tgagagtgatattgagtgatgtaatattagggaacctttcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacg 262  Q
    |||||||||| || || ||||| |  ||||||||||||| ||||||| ||| |||| ||||||| |||   ||||| ||| | ||  ||||||||||||     
T  2477485 tgagagtgatgtttagggatgtgacgttagggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagact 2477584  T
Q  263 gttggtgatggagagaaactgttttga 289  Q
    |||||| ||||| ||||||| ||||||    
T  2477585 gttggttatggacagaaactcttttga 2477611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 2367731 - 2367678
Alignment:
Q  250 agaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaaagag 303  Q
    ||||||| ||||||||||||||||||||||| ||||| || |||| ||||||||    
T  2367731 agaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2547299 - 2547355
Alignment:
Q  1 tgagagacgttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaa 57  Q
    |||||||||| ||| |||||||||| || ||||||||||||||| ||||| ||||||    
T  2547299 tgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaa 2547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 493
Target Start/End: Original strand, 2467679 - 2467738
Alignment:
Q  434 gtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgc 493  Q
    |||||||||||||||||| ||| | |||||||| |||| |||||||| ||||| ||||||    
T  2467679 gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatgaacatgttgc 2467738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 2477349 - 2477436
Alignment:
Q  9 gttaaacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtcta 96  Q
    |||||| |||||||||| |  |||||||||| |||| ||||| |||||||| ||   | |||||||||||| |||||| |||||||||    
T  2477349 gttaaatttttcatcttttttgacaaagctctcaacccatttacaggaaccgtggtggggtggtagagagctagcgatctgaggtcta 2477436  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 5106380 - 5106330
Alignment:
Q  239 gattttgaccaagaatcgaagacggttggtgatggagagaaactgttttga 289  Q
    |||| ||||| |||||||| |||||||||||||||| | ||||||||||||    
T  5106380 gattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttga 5106330  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 6007669 - 6007723
Alignment:
Q  250 agaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaaagaga 304  Q
    ||||||| |||| ||||||||||||||| |||||||| || |||||||| |||||    
T  6007669 agaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagaga 6007723  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 2467315 - 2467416
Alignment:
Q  16 ttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtagagagcgagcgatttgaggtctaaaggggaaacggagatttt 115  Q
    |||||||||  | ||| |||||||||||| ||| | |||||||| | |  | ||||||||||| ||| ||||||||||| |||||| ||  |||||||||    
T  2467315 ttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagatttt 2467414  T
Q  116 gg 117  Q
    ||    
T  2467415 gg 2467416  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 493
Target Start/End: Complemental strand, 5102005 - 5101944
Alignment:
Q  432 tcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgc 493  Q
    |||||||||||||||||||| ||| | |||||||| || || ||||||| ||||| ||||||    
T  5102005 tcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaacctgttgc 5101944  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 2486430 - 2486510
Alignment:
Q  435 tcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttcccattttt 515  Q
    |||||||||||||| || ||  | |||||||| |||||||| ||||  || | ||||||||||||| ||||| ||||||||    
T  2486430 tcgttgaggaatttaaagattcgctcccataattcctctgggaaatacgagcatgttgcttctgttgctgttgccattttt 2486510  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 2519366 - 2519422
Alignment:
Q  430 cctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaac 486  Q
    |||||||||||||||| |||| |||| | |||||||| ||||| ||||||| |||||    
T  2519366 cctcgtcgttgaggaacttgacaatgcgctcccataactcctccggtaaatatgaac 2519422  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 12121049 - 12121013
Alignment:
Q  253 atcgaagacggttggtgatggagagaaactgttttga 289  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttga 12121013  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
Q  189 ttagggaacctttcaaagagacgattaaggaaagggattgttgcctcggagattttgaccaagaatcgaagacggttggtgatggagagaaactgttt 286  Q
    ||||||| |||||| ||||| |||  || ||||||||| |||   |||| |||| ||||| ||||||||||||| ||||||||||| | |||||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 15091404 - 15091356
Alignment:
Q  256 gaagacggttggtgatggagagaaactgttttgaaacgagggaaagaga 304  Q
    |||||| ||||||||||||||| |||||||| || |||||||| |||||    
T  15091404 gaagactgttggtgatggagaggaactgtttggagacgagggagagaga 15091356  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 32268774 - 32268810
Alignment:
Q  250 agaatcgaagacggttggtgatggagagaaactgttt 286  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32268774 agaatcgaagacggttggtgatggagagtaactgttt 32268810  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 41900311 - 41900257
Alignment:
Q  250 agaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaaagaga 304  Q
    |||||||||||  |||||||||||||||||||||||| || ||||| || |||||    
T  41900311 agaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagaga 41900257  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 12846943 - 12846988
Alignment:
Q  253 atcgaagacggttggtgatggagagaaactgttttgaaacgaggga 298  Q
    |||| |||||||||||||||||||| ||||| || |||||||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgaggga 12846988  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 15838018 - 15837982
Alignment:
Q  250 agaatcgaagacggttggtgatggagagaaactgttt 286  Q
    ||||||| |||||||||||||||||||||||||||||    
T  15838018 agaatcggagacggttggtgatggagagaaactgttt 15837982  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 33161437 - 33161491
Alignment:
Q  250 agaatcgaagacggttggtgatggagagaaactgttttgaaacgagggaaagaga 304  Q
    ||||||||||||  || |||||||||||||||||||| || |||||||| |||||    
T  33161437 agaatcgaagactattagtgatggagagaaactgtttggagacgagggatagaga 33161491  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 7555449 - 7555490
Alignment:
Q  262 ggttggtgatggagagaaactgttttgaaacgagggaaagag 303  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  7555449 ggttggtgatagagagaaactgtttggaaacgagggagagag 7555490  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 32152210 - 32152258
Alignment:
Q  250 agaatcgaagacggttggtgatggagagaaactgttttgaaacgaggga 298  Q
    ||||||| |||| ||||||||||||||| |||||||| || ||||||||    
T  32152210 agaatcggagactgttggtgatggagaggaactgtttggagacgaggga 32152258  T

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