View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21577_high_3 (Length: 485)
Name: NF21577_high_3
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21577_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 28 - 472
Target Start/End: Complemental strand, 34023373 - 34022927
Alignment:
| Q |
28 |
gagatgaactctaatcaatgaactaaagtgatagagttattcattgaatacatgaatctgtccactaatattatcattatttaactcgttgtcagcttac |
127 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023373 |
gagatgaactctaattaatgaactaaagtgatagacttattcattgaatacatgaatctgtccactaatattatcattatttaactcgttgtcagcttac |
34023274 |
T |
|
| Q |
128 |
ttgcaactttcacaactctatctataattgcattttacaacttcatgaacatagcaaatctttggttttagtgcacattttcgctgcccaacattatgca |
227 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
34023273 |
ttgcaactttcacaactctatctataattccattttacaacttcatgaacatagcaaatctttggttttagtgcacattttcactgcctaacattatgca |
34023174 |
T |
|
| Q |
228 |
aatgcaatggttcccataaat--ggagaagtttattagtcacctttcatgattgttggtcctcgcaaccaaagctcccctttatggccaggagataatgc |
325 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34023173 |
aatgcaatggttcccataaatatggagaagtttattaatcacctttcatgattgttggtcctcgcaaccaaagctcccctttataaccaggagataatgc |
34023074 |
T |
|
| Q |
326 |
ctcaacagtaacagggtcaactatcttggcttccatattttctgctagtcgacccacagaaccgtggcgcttagcttcatcataacctatcattcttgct |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023073 |
ctcaacagtaacagggtcaactatcttggcttccatattttctgctagtcgacccacagaaccgtggcgcttagcttcatcataacctatcattcttgct |
34022974 |
T |
|
| Q |
426 |
accgctcctccactttcagtcagaccatatccctataagtaaacaat |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34022973 |
accgctcctccactttcagtcagaccatatccctataagtaaacaat |
34022927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 28 - 467
Target Start/End: Complemental strand, 34030625 - 34030185
Alignment:
| Q |
28 |
gagatgaactctaatcaatgaactaaagtgatagagttattcattgaatacatgaatctgtccactaatattatcattatttaactcgttgtcagcttac |
127 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| || |
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|
| T |
34030625 |
gagatgaactccaatcaatgaactaaagtgagagacatattcattgaatacatgaatctgtccactaatattatctttacttaactcattgtcagcctat |
34030526 |
T |
|
| Q |
128 |
ttgcaactttcacaactctatctataattgcattttacaacttcatgaacatagcaaatctttggtttt-agtgcacattttcgctgcccaacattatgc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||| |
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|
| T |
34030525 |
ttgcaactttcacaactctatctataattgcattttacaacttcatgaacatagcaaatctttagtttttagtgcacattttcactgcctaacattatgc |
34030426 |
T |
|
| Q |
227 |
aaatgcaatggttcccataaatggagaagtttattagtcacctttcatgattgttggtcctcgcaaccaaagctcccctttatggccaggagataatgcc |
326 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
34030425 |
aaatgcaatggttcgcataaatggagaggtttattaatcacctttcatgattgttggtcctcgcaaccaaagctcccctttctggccaggagataatgcc |
34030326 |
T |
|
| Q |
327 |
tcaacagtaacagggtcaactatcttggcttccatattttctgctagtcgacccacagaaccgtggcgcttagcttcatcataacctatcattcttgcta |
426 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34030325 |
tctccagtaacagggtcaactatcttagcttccatattttctgctagtcgacccacagaaccgtggcgcttagcttcatcaaaacctatcattcttgctg |
34030226 |
T |
|
| Q |
427 |
ccgctcctccactttcagtcagaccatatccctataagtaa |
467 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34030225 |
cccctcctccactttcagtcagaccatatccctaaaagtaa |
34030185 |
T |
|
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