View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21577_low_10 (Length: 313)
Name: NF21577_low_10
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21577_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 42734766 - 42734473
Alignment:
| Q |
1 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42734766 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttg |
42734667 |
T |
|
| Q |
101 |
ctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42734666 |
ctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcact |
42734567 |
T |
|
| Q |
201 |
attgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42734566 |
attgaatgtttcatttgggtttctaataggaattggcactgccatatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgt |
42734473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 42743744 - 42744040
Alignment:
| Q |
1 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcgatccaccac |
97 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
42743744 |
cttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccac |
42743843 |
T |
|
| Q |
98 |
ttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggc |
197 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| || |
|
|
| T |
42743844 |
ttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgc |
42743943 |
T |
|
| Q |
198 |
actattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
42743944 |
actattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgt |
42744040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 42753103 - 42753399
Alignment:
| Q |
1 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataaca-cgaac--cccaacaaaccttataggcggaaactcgtgcttttggcgatccaccac |
97 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||| | | | ||||||||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
42753103 |
cttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccac |
42753202 |
T |
|
| Q |
98 |
ttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggc |
197 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||| || |
|
|
| T |
42753203 |
ttgctgttccatttccattgccaaatacacttgcattggcaacgaaatttcctccagcagttgataaagtatgtgaaccatgaccttcaaagtcacgtgc |
42753302 |
T |
|
| Q |
198 |
actattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
42753303 |
actattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgt |
42753399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 42717119 - 42717326
Alignment:
| Q |
1 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42717119 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataacatgaatcccaacaaaccttataggctacaactcgtgcttttggcgatccaccacttg |
42717218 |
T |
|
| Q |
101 |
ctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcact |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||| ||||| |
|
|
| T |
42717219 |
ctgttccattgccatagccaaatacacttgcattagcaacaaaatttcctccggcagttgataaagtatgtgtaccatgaccatcaatgtcacgtgcact |
42717318 |
T |
|
| Q |
201 |
attgaatg |
208 |
Q |
| |
|
||| |||| |
|
|
| T |
42717319 |
attaaatg |
42717326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 42762728 - 42762929
Alignment:
| Q |
1 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaaccccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
42762728 |
cttatggcagcttcaaaaccagccaaaatgtctgcatcataacatccatcccaacaaaccttataggctgcaactcgtgcttttggtgatccaccacttg |
42762827 |
T |
|
| Q |
101 |
ctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcact |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| || || ||||| |
|
|
| T |
42762828 |
ctgttccatttccattgccaaatacacttgcattagcaacgaaatttcctccagcagttgataaagtgtgtgaaccatgaccttcactatcccgtgcact |
42762927 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
42762928 |
at |
42762929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 285
Target Start/End: Original strand, 42769667 - 42769895
Alignment:
| Q |
51 |
ccaacaaaccttataggcggaaactcgtgcttttggcgatccaccacttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcct |
150 |
Q |
| |
|
|||||| ||||||||||| | ||||||||| || || |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
42769667 |
ccaacataccttataggccgcaactcgtgcgttaggtgatccaccacttgctgttcctaggccattgccaaatacacttgcatttgcaacaaaatttcct |
42769766 |
T |
|
| Q |
151 |
ccagcagttgataaagtatgtgaaccatgacctacactgtcacgggcactattgaatgtttcatttgggtttctaataggaattggcactgccagatagc |
250 |
Q |
| |
|
|| || |||||||||||||||||||||||||| || ||| || ||||||| ||||||| |||||| | | || || | |||||| ||||| |
|
|
| T |
42769767 |
cccgcggttgataaagtatgtgaaccatgaccatcaaagtcgcgtgcactatggaatgttacatttgtggatttaccagca------tctgccaaatagc |
42769860 |
T |
|
| Q |
251 |
ctttgtaaaaatatcttgcgccaataagcttccta |
285 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42769861 |
ctttgtaaaaatatcttgctccaattagcttccta |
42769895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 42717371 - 42717406
Alignment:
| Q |
250 |
cctttgtaaaaatatcttgcgccaataagcttccta |
285 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42717371 |
cctttgtaaaaatatcttgctccaataagcttccta |
42717406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 42762961 - 42763009
Alignment:
| Q |
240 |
tgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaa |
288 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
42762961 |
tgccagaaagcctttaaaaaaatatcttgctccaataagctttctacaa |
42763009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 23040730 - 23040434
Alignment:
| Q |
1 |
cttatggcagcttcaaaaccagccaaaatatctgcatcataacacgaa---ccccaacaaaccttataggcggaaactcgtgcttttggcgatccaccac |
97 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| | |||||| |||||||| |||||||||| |
|
|
| T |
23040730 |
cttattgcagcttcaaaaccagccaaaatatctgcatcatgacataaatccccccagcaaaccttataggctgcaactcgagcttttggtgatccaccac |
23040631 |
T |
|
| Q |
98 |
ttgctgttccatttccatagccaaatacacttgcattagcaacaaaatttcctccagcagttgataaagtatgtgaaccatgacctacactgtcacgggc |
197 |
Q |
| |
|
|||||||||| |||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| || |||||| || |
|
|
| T |
23040630 |
ttgctgttcctcggccattgccaaatacactcgcattagcaacgaaatttcctccaacagttgataaagtatgtgaaccatgaccatcaaagtcacgtgc |
23040531 |
T |
|
| Q |
198 |
actattgaatgtttcatttgggtttctaataggaattggcactgccagatagcctttgtaaaaatatcttgcgccaataagcttcctacaaggatgt |
294 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
23040530 |
actattgaatgtttcatttgggtctctaataggaattggcattgccagatagcctttgttaaaatatcttgctccaataagcttcctacaaagatgt |
23040434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University