View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21577_low_14 (Length: 211)

Name: NF21577_low_14
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21577_low_14
NF21577_low_14
[»] chr4 (5 HSPs)
chr4 (79-211)||(49583154-49583286)
chr4 (86-211)||(5198998-5199124)
chr4 (119-203)||(4848615-4848699)
chr4 (27-68)||(49583037-49583078)
chr4 (79-156)||(15522606-15522683)
[»] chr8 (2 HSPs)
chr8 (119-210)||(7411339-7411429)
chr8 (147-211)||(3424309-3424372)
[»] chr1 (3 HSPs)
chr1 (98-166)||(35811949-35812017)
chr1 (79-128)||(16424901-16424950)
chr1 (119-159)||(32900378-32900418)
[»] chr6 (1 HSPs)
chr6 (142-211)||(6134227-6134296)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 49583286 - 49583154
Alignment:
Q  79 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583286 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 49583187  T
Q  179 taatttttataagaattatgcaatgttgtgatt 211  Q
    |||||||||||||| ||||||||||||||||||    
T  49583186 taatttttataagacttatgcaatgttgtgatt 49583154  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 5199124 - 5198998
Alignment:
Q  86 aaattcattactaaattatgaaaataattacacta-tgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaattt 184  Q
    ||||||||||| |||||||||||| ||||| | || |||||||| ||||||| |||||||||||||| ||||||||| |||| |||| ||||| ||||||    
T  5199124 aaattcattacaaaattatgaaaagaattatagtaatgaaattatgaagaaacaatgagaaattaagttattatacattatatgataatataaataattt 5199025  T
Q  185 ttataagaattatgcaatgttgtgatt 211  Q
    | |||| | || ||||||||| |||||    
T  5199024 taataatatttgtgcaatgttatgatt 5198998  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 4848615 - 4848699
Alignment:
Q  119 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatg 203  Q
    |||||||||| ||||||| |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||| | || |||||||    
T  4848615 tatgaaattatgaagaaacaatgagaaattaagttattatacattatatgatagtataaataattttaataatatttgtgcaatg 4848699  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 49583037 - 49583078
Alignment:
Q  27 tatcatatccaagattttaaataaaggtctcagtcaagtttg 68  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  49583037 tatcatatccaaggttttaaataaaggtctcagtcaagtttg 49583078  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 15522683 - 15522606
Alignment:
Q  79 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctatt 156  Q
    |||||| |||||||||||  ||| ||||||||||||||| ||| |||||| ||| ||| ||| |||||||||| ||||    
T  15522683 aagaaacaaattcattacataataatgaaaataattacattataaaattatgaataaacaataagaaattaagttatt 15522606  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 7411429 - 7411339
Alignment:
Q  119 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgat 210  Q
    |||||||  ||||||||| ||| |||||||||| ||||||||| |||||||||  |||| ||||||| |||||| || || |||||||||||    
T  7411429 tatgaaaagaagaagaaacaat-agaaattaagttattatacattataagatatcataaataattttaataagatttgtgaaatgttgtgat 7411339  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 3424372 - 3424309
Alignment:
Q  147 ttaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgatt 211  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||  ||| |||| ||||||||||    
T  3424372 ttaagttattatacattatatgatagtataaataatttttataa-tattgtgcattgttgtgatt 3424309  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 35811949 - 35812017
Alignment:
Q  98 aaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatata 166  Q
    |||||||  ||| ||||||| |||| ||||||||||||| | |||||||||||| ||||||||| ||||    
T  35811949 aaattattgaaagaattacattatggaattaagaagaaacagtgagaaattaagttattatacattata 35812017  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 16424950 - 16424901
Alignment:
Q  79 aagaaataaattcattactaaattatgaaaataattacactatgaaatta 128  Q
    |||||| ||||||||||| |||||| |||||||||| || ||||||||||    
T  16424950 aagaaacaaattcattacaaaattaagaaaataatttcattatgaaatta 16424901  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 32900378 - 32900418
Alignment:
Q  119 tatgaaattaagaagaaataatgagaaattaagctattata 159  Q
    |||||||||| ||||||| |||||||||||||| |||||||    
T  32900378 tatgaaattatgaagaaacaatgagaaattaagttattata 32900418  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 6134296 - 6134227
Alignment:
Q  142 agaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgatt 211  Q
    |||||| ||| ||||||||| |||  |||||||||| | ||||| |||||| || |||||||||||||||    
T  6134296 agaaatcaagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgatt 6134227  T

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