View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21577_low_4 (Length: 421)
Name: NF21577_low_4
Description: NF21577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21577_low_4 |
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| [»] scaffold0303 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0303 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 19136 - 19535
Alignment:
| Q |
1 |
cataaatgcaaagaaaaggaaatattaagttctcatacaaaaagaagggcttacatcgcctgggatgacaaagacacaaactcatccgattaatcaaaaa |
100 |
Q |
| |
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||||||||||||||||| ||||||| || ||||||| ||||||||| |||||| ||||| ||| |||||||| || ||||||||||| || ||||| ||| |
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| T |
19136 |
cataaatgcaaagaaaaagaaatatcaaattctcattcaaaaagaaaggcttatatcgcttggaatgacaaaaactcaaactcatccaatgaatcagaaa |
19235 |
T |
|
| Q |
101 |
atgaagtagcatatccatgtttcatagtaaaccatgaggaagatgaggtaaactctgcttaatctgaatataacttaacttatgatgagttgtttactat |
200 |
Q |
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|||||||||||||| |||||||||| | |||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
19236 |
atgaagtagcatattcatgtttcatggcaaactatgaggaagatgaggtaaactctattgaatctgaatatgacttaacttatgatgagttgtttactat |
19335 |
T |
|
| Q |
201 |
ttgtaaataactaaatgatgagtcaactaagcttagaaaaattgtttattcccctaagaaaaccgtttccgctcttgaatcaaaagttaatattttaaac |
300 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
19336 |
ttgtaaagaattaaatgatgagtcaactaagcttagaaaaattgtttcttcctctaagaaaactatttccactcttgaatcaaaaattgatattttaaac |
19435 |
T |
|
| Q |
301 |
aaggaaatagaagttcttaaag-nnnnnnngtttttgtgagtggtgtctcttcttgtaccccttgtgaaaataaaaaggaaaatattttcaagtgtgatg |
399 |
Q |
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|||||||||||| ||||||||| |||||||| |||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
19436 |
aaggaaatagaaattcttaaagagaaaacagtttttgtaagtgaagtttcttcttgtacctcttgtgaaaataaaaaggcaaatattttcaagtgtgatg |
19535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 3275449 - 3275848
Alignment:
| Q |
1 |
cataaatgcaaagaaaaggaaatattaagttctcatacaaaaagaagggcttacatcgcctgggatgacaaagacacaaactcatccgattaatcaaaaa |
100 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||| ||||||||| |||||| ||||| ||| |||||||| || ||||||||||| || ||||| ||| |
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| T |
3275449 |
cataaatgcaaagaaaaagaaatatcaaattctcattcaaaaagaaaggcttatatcgcttggaatgacaaaaactcaaactcatccaatgaatcagaaa |
3275548 |
T |
|
| Q |
101 |
atgaagtagcatatccatgtttcatagtaaaccatgaggaagatgaggtaaactctgcttaatctgaatataacttaacttatgatgagttgtttactat |
200 |
Q |
| |
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|||||||||||||| |||||||||| | |||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
3275549 |
atgaagtagcatattcatgtttcatggcaaactatgaggaagatgaggtaaactctattgaatctgaatatgacttaacttatgatgagttgtttactat |
3275648 |
T |
|
| Q |
201 |
ttgtaaataactaaatgatgagtcaactaagcttagaaaaattgtttattcccctaagaaaaccgtttccgctcttgaatcaaaagttaatattttaaac |
300 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
3275649 |
ttgtaaagaattaaatgatgagtcaactaagcttagaaaaattgtttcttcctctaagaaaactatttccactcttgaatcaaaaattgatattttaaac |
3275748 |
T |
|
| Q |
301 |
aaggaaatagaagttcttaaag-nnnnnnngtttttgtgagtggtgtctcttcttgtaccccttgtgaaaataaaaaggaaaatattttcaagtgtgatg |
399 |
Q |
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|||||||||||| ||||||||| |||||||| |||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
3275749 |
aaggaaatagaaattcttaaagagaaaacagtttttgtaagtgaagtttcttcttgtacctcttgtgaaaataaaaaggcaaatattttcaagtgtgatg |
3275848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 46 - 399
Target Start/End: Complemental strand, 114961 - 114607
Alignment:
| Q |
46 |
agggcttacatcgcctgggatgacaaagacacaaactcatccgattaatcaaaaaatgaagtagcatatccatgtttcatagtaaaccatgaggaagatg |
145 |
Q |
| |
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|||||||| ||||| | |||||||||| | |||||||||||| || ||||| ||||||||||||||||| |||||||||| | ||||||||| ||||||| |
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| T |
114961 |
agggcttatatcgcttcggatgacaaatatacaaactcatccaatgaatcagaaaatgaagtagcatattcatgtttcatggcaaaccatgatgaagatg |
114862 |
T |
|
| Q |
146 |
aggtaaactctgcttaatctgaatataacttaacttatgatgagttgtttactatttgtaaataactaaatgatgagtcaactaagcttagaaaaattgt |
245 |
Q |
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||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
114861 |
aggtaaactctattgaatctgaatatgacttaacttatgatgagttgtttactatttgtaaagaattaaatgatgagtcaactaagcttagaaaaattgt |
114762 |
T |
|
| Q |
246 |
ttattcccctaagaaaaccgtttccgctcttgaatcaaaagttaatattttaaacaaggaaatagaagttcttaaag-nnnnnnngtttttgtgagtggt |
344 |
Q |
| |
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|| || |||||||||| ||||| ||||||||| |||| || ||||||||||||||||||||||| ||| ||||| ||||||| |||| |
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| T |
114761 |
ttcaacctctaagaaaactatttccactcttgaataaaaaattgatattttaaacaaggaaatagaaattcataaagagaaataaatttttgttagtgaa |
114662 |
T |
|
| Q |
345 |
gtctcttcttgtaccccttgtgaaaataaaaaggaaaatattttcaagtgtgatg |
399 |
Q |
| |
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|| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
114661 |
gtttcttcttgcacctcttgtgaaaataaaaaggaaaatattttcaagtgtgatg |
114607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3589747 - 3589904
Alignment:
| Q |
1 |
cataaatgcaaagaaaaggaaatattaagttctcatacaaaaagaagggcttacatcgcctgggatgacaaagacacaaactcatccgattaatcaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3589747 |
cataaatgcaaagaaaaggaaatattaagttctcatacaaaaagaagggcttatatcgcctgggatgacaaagacataaactcatccgattaatcaaaaa |
3589846 |
T |
|
| Q |
101 |
atgaagtagcatatccatgtttcatagtaaaccatgaggaagatgaggtaaactctgct |
159 |
Q |
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|||||||| ||||||||||||| || ||||||||||||||||||||||| |||| |||| |
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| T |
3589847 |
atgaagtaacatatccatgttttat-gtaaaccatgaggaagatgaggtgaactttgct |
3589904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 138 - 399
Target Start/End: Original strand, 8825042 - 8825304
Alignment:
| Q |
138 |
ggaagatgaggtaaactctgcttaatctgaatataacttaacttatgatgagttgtttactatttgtaaataactaaatgatgagtcaactaagcttaga |
237 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||||||| | ||||||||||||||||||||| || ||||| |||||||||| ||||||||| |
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|
| T |
8825042 |
ggaagatgaggtaaactatgtcgaatctgaatatgacttaacttattacgagttgtttactatttgtaaagaattaaataatgagtcaacaaagcttaga |
8825141 |
T |
|
| Q |
238 |
aaaattgtttattcccctaagaaaaccgtttccgctcttgaatcaaaagttaatattttaaacaaggaaatagaagttcttaaag-nnnnnnngtttttg |
336 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| | ||||||||| |||| || ||| || ||| ||| |||||| | ||||||||| |||||| |
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| T |
8825142 |
aaaattgtttcttcctctaagaaaactatttgcactcttgaataaaaaattgatagttgaaataagtaaatagtaattcttaaagagaaggaagtttttc |
8825241 |
T |
|
| Q |
337 |
tgagtggtgtctcttcttgtaccccttgtgaaaataaaaaggaaaatattttcaagtgtgatg |
399 |
Q |
| |
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| |||| || | |||||||||| ||||| ||||||| ||||||||||||||||||||||||| |
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| T |
8825242 |
taagtgaagtatgttcttgtacctcttgtaaaaataagaaggaaaatattttcaagtgtgatg |
8825304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8824943 - 8825041
Alignment:
| Q |
1 |
cataaatgcaaagaaaaggaaatattaagttctca----tacaaaaagaagggcttacatcgcctgggatgacaaagacacaaactcatccgattaatc |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||||||| || ||| ||||| |||||||| ||| ||||||||||||||||| |||| |
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| T |
8824943 |
cataaatgcaaagaaaaggaaatatcaagttcttaattatacaaaaagaaaggtttatatcgcttgggatgagaaaaacacaaactcatccgataaatc |
8825041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 144 - 399
Target Start/End: Original strand, 14859475 - 14859731
Alignment:
| Q |
144 |
tgaggtaaactctgcttaatctgaatataacttaacttatgatgagttgtttactatttgtaaataactaaatgatgagtcaactaagcttagaaaaatt |
243 |
Q |
| |
|
||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||| |
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| T |
14859475 |
tgaggtaaactctattgaatttgaatatgacttaacttatgatgagttgtttactatttgtaaagaattaaaagatgagtcaactacgcttagaaaaatt |
14859574 |
T |
|
| Q |
244 |
gtttattcccctaagaaaaccgtttccgctcttgaatcaaaagttaatattttaaacaaggaaatagaagttcttaaag-nnnnnnngtttttgtgagtg |
342 |
Q |
| |
|
|||| || |||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||| ||||||| |||| |
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|
| T |
14859575 |
gtttcaacctctaagaaaactatttccactcttgaatcaaaaattgatattttaaacaaggaaatagaaattcttaaagagaaacaaatttttgttagtg |
14859674 |
T |
|
| Q |
343 |
gtgtctcttcttgtaccccttgtgaaaataaaaaggaaaatattttcaagtgtgatg |
399 |
Q |
| |
|
|| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14859675 |
aagtttcttcttgcacctcttgtgaaaataaaaaggaaaatattttcaagtgtgatg |
14859731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 46 - 252
Target Start/End: Original strand, 24171647 - 24171853
Alignment:
| Q |
46 |
agggcttacatcgcctgggatgacaaagacacaaactcatccgattaatcaaaaaatgaagtagcatatccatgtttcatagtaaaccatgaggaagatg |
145 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| || ||| ||||| ||||||||||||||| | ||||||||| | ||||||| ||||||||| |
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|
| T |
24171647 |
agggcttatatcgcttgggatgacaaagacacaaacttatatgatgaatcagaaaatgaagtagcatgtttatgtttcatggcaaaccataaggaagatg |
24171746 |
T |
|
| Q |
146 |
aggtaaactctgcttaatctgaatataacttaacttatgatgagttgtttactatttgtaaataactaaatgatgagtcaactaagcttagaaaaattgt |
245 |
Q |
| |
|
|| | || ||| | ||| ||||| | | ||||||||||||||||| |||| ||| |||||| || |||||||||| | ||||||||||||||||||||| |
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| T |
24171747 |
agatcaattcttttgaatttgaatgtgaattaacttatgatgagttatttaatatctgtaaagaattaaatgatgaattaactaagcttagaaaaattgt |
24171846 |
T |
|
| Q |
246 |
ttattcc |
252 |
Q |
| |
|
|| |||| |
|
|
| T |
24171847 |
ttcttcc |
24171853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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